Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   VV34_RS06920 Genome accession   NZ_LN649259
Coordinates   1315840..1316976 (+) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis strain BS49     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310840..1321976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV34_RS06900 (BS49_13720) uxaA 1311290..1312783 (+) 1494 WP_003245409.1 UxaA family hydrolase -
  VV34_RS06905 (BS49_13730) yjnA 1312822..1313586 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  VV34_RS06910 (BS49_13740) bstD 1313811..1314275 (-) 465 WP_003245144.1 DinB family protein -
  VV34_RS06915 (BS49_13750) yjoB 1314424..1315695 (+) 1272 WP_003245490.1 ATPase YjoB -
  VV34_RS06920 (BS49_13760) rapC 1315840..1316976 (+) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  VV34_RS06925 (BS49_13770) phrA 1316966..1317100 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  VV34_RS06930 (BS49_13780) yjpA 1317131..1317388 (-) 258 WP_003232731.1 YciI family protein -
  VV34_RS06935 (BS49_13790) xlyB 1317509..1318462 (+) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  VV34_RS06940 (BS49_13800) yjqA 1318502..1318879 (-) 378 WP_003245254.1 PH domain-containing protein -
  VV34_RS06945 (BS49_13810) pghB 1318985..1319587 (+) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  VV34_RS06950 (BS49_13820) xpdC 1319664..1320500 (+) 837 WP_003245071.1 manganese catalase family protein -
  VV34_RS06955 (BS49_13830) xkdA 1320544..1321140 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  VV34_RS06960 (BS49_13840) xre 1321303..1321644 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=991066 VV34_RS06920 WP_010886491.1 1315840..1316976(+) (rapC) [Bacillus subtilis strain BS49]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=991066 VV34_RS06920 WP_010886491.1 1315840..1316976(+) (rapC) [Bacillus subtilis strain BS49]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418