Detailed information NTG0991015

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAH430_RS20770
• Genome accession: NZ_CP153601
• Coordinates: 4237478..4238278 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn5529
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4232478..4243278

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAH430_RS20735 (AAH430_20700)	gspH	4232634..4233149 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
AAH430_RS20740 (AAH430_20705)	gspI	4233146..4233511 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAH430_RS20745 (AAH430_20710)	gspJ	4233508..4234104 (+)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
AAH430_RS20750 (AAH430_20715)	gspK	4234101..4235087 (+)	987	WP_077254427.1	type II secretion system minor pseudopilin GspK	-
AAH430_RS20755 (AAH430_20720)	gspL	4235074..4236267 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
AAH430_RS20760 (AAH430_20725)	-	4236260..4236745 (+)	486	WP_004151943.1	type II secretion system protein M	-
AAH430_RS20765 (AAH430_20730)	-	4236735..4237481 (+)	747	WP_004145897.1	type II secretion system protein N	-
AAH430_RS20770 (AAH430_20735)	pilD	4237478..4238278 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
AAH430_RS20775 (AAH430_20740)	hrpB	4238326..4240755 (-)	2430	WP_040181696.1	ATP-dependent helicase HrpB	-
AAH430_RS20780 (AAH430_20745)	thpR	4240828..4241364 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AAH430_RS20785 (AAH430_20750)	sfsA	4241364..4242080 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAH430_RS20790 (AAH430_20755)	dksA	4242243..4242698 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=991015 AAH430_RS20770 WP_002888947.1 4237478..4238278(+) (pilD) [Klebsiella pneumoniae strain Kpn5529]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991015 AAH430_RS20770 WP_002888947.1 4237478..4238278(+) (pilD) [Klebsiella pneumoniae strain Kpn5529]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425