Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   VV34_RS00330 Genome accession   NZ_LN649259
Coordinates   60129..60359 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain BS49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55129..65359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV34_RS00295 (BS49_00650) ridA 55294..55671 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  VV34_RS00300 (BS49_00660) spoVG 55865..56158 (+) 294 WP_009966269.1 septation regulator SpoVG -
  VV34_RS00310 (BS49_00670) glmU 56351..57721 (+) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  VV34_RS00315 (BS49_00680) prsS 57744..58697 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  VV34_RS00320 (BS49_00690) rplYB 58782..59396 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  VV34_RS00325 (BS49_00700) pth 59503..60069 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  VV34_RS00330 (BS49_00710) subA/fin 60129..60359 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  VV34_RS00335 (BS49_00720) mfd 60429..63962 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  VV34_RS00340 (BS49_00730) spoVT 64098..64634 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=991014 VV34_RS00330 WP_003243417.1 60129..60359(+) (subA/fin) [Bacillus subtilis strain BS49]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=991014 VV34_RS00330 WP_003243417.1 60129..60359(+) (subA/fin) [Bacillus subtilis strain BS49]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1