Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SRS_RS09785 Genome accession   NZ_LN626917
Coordinates   1941249..1941989 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1936249..1946989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS09760 hemH 1937126..1938049 (-) 924 WP_000162875.1 ferrochelatase -
  SRS_RS09765 hemE 1938107..1939144 (-) 1038 WP_000233541.1 uroporphyrinogen decarboxylase -
  SRS_RS09770 - 1939134..1939220 (-) 87 WP_031875110.1 hypothetical protein -
  SRS_RS09775 traP 1939406..1939909 (+) 504 WP_000737983.1 signal transduction protein TRAP -
  SRS_RS09780 ecsB 1940033..1941256 (-) 1224 WP_001245764.1 ABC transporter permease EcsB -
  SRS_RS09785 pptA 1941249..1941989 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  SRS_RS09790 - 1942123..1942545 (+) 423 WP_000004981.1 HIT family protein -
  SRS_RS09795 - 1942687..1943052 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  SRS_RS09800 - 1943785..1944342 (+) 558 WP_000477959.1 DUF3267 domain-containing protein -
  SRS_RS09805 - 1944547..1945509 (+) 963 WP_000782130.1 foldase protein PrsA -
  SRS_RS09810 yhaM 1945630..1946571 (-) 942 WP_045179317.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=990989 SRS_RS09785 WP_000216874.1 1941249..1941989(-) (pptA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=990989 SRS_RS09785 WP_000216874.1 1941249..1941989(-) (pptA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATATACGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACGTTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545