Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SRS_RS07425 Genome accession   NZ_LN626917
Coordinates   1493080..1493925 (-) Length   281 a.a.
NCBI ID   WP_001573568.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1488080..1498925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS07390 rpsR 1489068..1489310 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  SRS_RS07395 ssbA 1489362..1489865 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  SRS_RS07400 rpsF 1489886..1490182 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  SRS_RS07405 - 1490426..1490617 (+) 192 WP_001052483.1 hypothetical protein -
  SRS_RS07410 ychF 1490703..1491800 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  SRS_RS07415 - 1491812..1492015 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  SRS_RS07420 - 1492045..1492926 (-) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  SRS_RS07425 spo0J 1493080..1493925 (-) 846 WP_001573568.1 ParB/RepB/Spo0J family partition protein Regulator
  SRS_RS07430 - 1494589..1495692 (+) 1104 WP_000655687.1 PLP-dependent transferase -
  SRS_RS07435 metC 1495689..1496849 (+) 1161 WP_000175858.1 cystathionine beta-lyase MetC -
  SRS_RS07440 - 1496818..1498659 (+) 1842 WP_000077312.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32796.88 Da        Isoelectric Point: 10.1158

>NTDB_id=990966 SRS_RS07425 WP_001573568.1 1493080..1493925(-) (spo0J) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIKQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=990966 SRS_RS07425 WP_001573568.1 1493080..1493925(-) (spo0J) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CGCAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCGCAAGATGA
CTTTGTGAGAATCATTAAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381