Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SRS_RS03415 Genome accession   NZ_LN626917
Coordinates   699690..700661 (+) Length   323 a.a.
NCBI ID   WP_000876311.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 694690..705661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS03395 nrdI 695756..696154 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  SRS_RS03400 nrdE 696117..698222 (+) 2106 WP_045178686.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  SRS_RS03405 nrdF 698342..699313 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  SRS_RS03415 ceuB 699690..700661 (+) 972 WP_000876311.1 ABC transporter permease Machinery gene
  SRS_RS03420 - 700648..701604 (+) 957 WP_001245566.1 iron chelate uptake ABC transporter family permease subunit -
  SRS_RS03425 - 701601..702362 (+) 762 WP_000616865.1 ABC transporter ATP-binding protein -
  SRS_RS03430 - 702477..703505 (+) 1029 WP_000754458.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  SRS_RS03435 - 703822..704136 (-) 315 WP_001127269.1 CHY zinc finger protein -
  SRS_RS03440 murB 704154..705077 (-) 924 WP_000608444.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35558.04 Da        Isoelectric Point: 10.1963

>NTDB_id=990933 SRS_RS03415 WP_000876311.1 699690..700661(+) (ceuB) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=990933 SRS_RS03415 WP_000876311.1 699690..700661(+) (ceuB) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATTATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTGTCAGACTCACAGCAAAATATATTGTTCTCAAGCCGAATACCGAGAACGA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGAATCTTAATTGCCCTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATCTCATTACGT
ACAAACGCAGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATCTTGTA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCAAATCATTTCACAATTGTAGGTATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATCAATATTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTTGTG
ACAGTTGGAACTTTACCCTTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTAAAAAATGC
AATTCCTCATACGATGATGTTAGGTGCCATCTTTGTATTGTTTTCTGATATAGTTGGCAGAATTGTAGTTTATCCATATG
AAATTAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTACTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.812

99.071

0.474

Multiple sequence alignment