Detailed information NTG0990908

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ECRV308_RS20140
• Genome accession: NZ_LM995446
• Coordinates: 4066735..4067760 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain K-12 substr. RV308
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4061735..4072760

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECRV308_RS20110 (ECRV308_03975)	zapB	4061819..4062064 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
ECRV308_RS20115 (ECRV308_03976)	rraA	4062149..4062634 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ECRV308_RS20120 (ECRV308_03977)	menA	4062727..4063653 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ECRV308_RS20125 (ECRV308_03978)	hslU	4063720..4065051 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
ECRV308_RS20130 (ECRV308_03979)	hslV	4065061..4065591 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ECRV308_RS20135 (ECRV308_03980)	ftsN	4065684..4066643 (-)	960	WP_000068828.1	cell division protein FtsN	-
ECRV308_RS20140 (ECRV308_03981)	cytR	4066735..4067760 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ECRV308_RS20145 (ECRV308_03982)	priA	4067916..4070114 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
ECRV308_RS20150 (ECRV308_03983)	rpmE	4070317..4070529 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
ECRV308_RS20155 (ECRV308_03984)	yiiX	4070590..4071198 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
ECRV308_RS20160 (ECRV308_03985)	metJ	4071382..4071699 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=990908 ECRV308_RS20140 WP_000644904.1 4066735..4067760(-) (cytR) [Escherichia coli strain K-12 substr. RV308]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=990908 ECRV308_RS20140 WP_000644904.1 4066735..4067760(-) (cytR) [Escherichia coli strain K-12 substr. RV308]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628