Detailed information NTG0990877

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECRV308_RS13985
• Genome accession: NZ_LM995446
• Coordinates: 2809084..2810076 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain K-12 substr. RV308
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2804084..2815076

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECRV308_RS13965 (ECRV308_02740)	otnK	2804860..2806026 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ECRV308_RS13970 (ECRV308_02741)	ygbL	2806118..2806756 (+)	639	WP_001278994.1	aldolase	-
ECRV308_RS13975 (ECRV308_02742)	ygbM	2806761..2807537 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ECRV308_RS13980 (ECRV308_02743)	ygbN	2807626..2808990 (+)	1365	WP_000104441.1	GntP family transporter	-
ECRV308_RS13985 (ECRV308_02744)	rpoS	2809084..2810076 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
ECRV308_RS13990 (ECRV308_02745)	nlpD	2810139..2811233 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ECRV308_RS13995 (ECRV308_02746)	pcm	2811418..2812044 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECRV308_RS14000 (ECRV308_02747)	surE	2812038..2812799 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECRV308_RS14005 (ECRV308_02748)	truD	2812780..2813829 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ECRV308_RS14010 (ECRV308_02749)	ispF	2813826..2814305 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECRV308_RS14015 (ECRV308_02750)	ispD	2814305..2815015 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=990877 ECRV308_RS13985 WP_000081588.1 2809084..2810076(-) (rpoS) [Escherichia coli strain K-12 substr. RV308]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=990877 ECRV308_RS13985 WP_000081588.1 2809084..2810076(-) (rpoS) [Escherichia coli strain K-12 substr. RV308]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715