Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HMPREF9318_RS07805 Genome accession   NZ_KB373319
Coordinates   5012..5767 (+) Length   251 a.a.
NCBI ID   WP_006738489.1    Uniprot ID   G5KFL3
Organism   Streptococcus urinalis FB127-CNA-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 12..10767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9318_RS07790 (HMPREF9318_01565) - 1340..2641 (+) 1302 WP_006739254.1 CHAP domain-containing protein -
  HMPREF9318_RS07795 (HMPREF9318_01566) - 2764..3732 (+) 969 WP_006739983.1 ribose-phosphate diphosphokinase -
  HMPREF9318_RS07800 (HMPREF9318_01567) - 3844..5022 (+) 1179 WP_006740441.1 pyridoxal phosphate-dependent aminotransferase -
  HMPREF9318_RS07805 (HMPREF9318_01568) recO 5012..5767 (+) 756 WP_006738489.1 DNA repair protein RecO Machinery gene
  HMPREF9318_RS07810 (HMPREF9318_01569) - 5995..6300 (-) 306 WP_006738932.1 DUF4298 domain-containing protein -
  HMPREF9318_RS07815 (HMPREF9318_01570) - 7267..8040 (-) 774 WP_006739657.1 hypothetical protein -
  HMPREF9318_RS07820 (HMPREF9318_01571) - 8252..9709 (-) 1458 WP_006740702.1 DNA primase family protein -
  HMPREF9318_RS07830 (HMPREF9318_01573) - 9774..10624 (-) 851 Protein_7 primase alpha helix C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29409.75 Da        Isoelectric Point: 5.7008

>NTDB_id=990730 HMPREF9318_RS07805 WP_006738489.1 5012..5767(+) (recO) [Streptococcus urinalis FB127-CNA-2]
MQTKESQGIVLYNKDFREDDMLVKIFTETSGKKMFFVKRARKSTLASVIQPLTQANFLLKLSDSGLSYIDDYKEVETYKS
INEDIFKLAYASYIMALADAAISDNEPDPHLFQFLQKTLTLMNEGLDYDVLTNIFEIQLLDRFGVQLNFDDCLFCHRKAQ
AFDFSYRYSGVICPEHFSKDERRAHVDPNVIYLINRFQNIQFDDLKTISIKTDMKVKLRLFIDSIYDEYVGIHLKSKRFI
DDLAKWGDIMR

Nucleotide


Download         Length: 756 bp        

>NTDB_id=990730 HMPREF9318_RS07805 WP_006738489.1 5012..5767(+) (recO) [Streptococcus urinalis FB127-CNA-2]
ATGCAAACTAAAGAGTCACAAGGAATTGTTCTCTATAACAAAGATTTCAGAGAAGATGATATGCTTGTCAAGATTTTTAC
AGAAACATCTGGGAAAAAGATGTTTTTTGTTAAGCGAGCTAGGAAGTCAACTTTGGCATCTGTTATTCAACCGCTAACTC
AAGCAAATTTCTTATTAAAATTAAGTGATTCAGGTCTCTCTTACATTGATGATTACAAAGAAGTCGAAACCTATAAATCC
ATTAATGAAGATATTTTTAAATTAGCATATGCTTCTTATATCATGGCTTTAGCTGATGCTGCTATATCAGATAATGAACC
TGATCCTCATTTATTCCAATTTTTACAGAAAACGTTGACATTAATGAATGAAGGTCTTGATTATGATGTATTAACGAATA
TTTTCGAAATTCAGTTATTAGATCGATTCGGTGTTCAGTTGAATTTTGATGATTGCTTATTTTGTCACCGCAAAGCGCAA
GCTTTTGATTTCTCCTATCGTTATTCAGGTGTCATTTGTCCAGAACACTTTTCAAAAGATGAAAGACGGGCACATGTCGA
TCCTAATGTTATTTATCTAATTAATCGTTTTCAAAATATTCAATTTGATGATTTGAAAACAATCTCAATAAAGACAGATA
TGAAAGTTAAACTTAGACTTTTTATTGATTCTATTTATGATGAGTACGTAGGAATTCATCTTAAAAGTAAACGATTTATA
GATGATTTAGCAAAATGGGGCGATATAATGAGGTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KFL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.753

100

0.618