Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACNRMP_RS16305 Genome accession   NZ_JBLWDC010000001
Coordinates   3483846..3484889 (-) Length   347 a.a.
NCBI ID   WP_011000966.1    Uniprot ID   Q8Y0M9
Organism   Ralstonia pseudosolanacearum strain PD 7123     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3478846..3489889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNRMP_RS16295 (ACNRMP_16295) - 3480745..3482835 (+) 2091 WP_028852850.1 site-specific recombinase -
  ACNRMP_RS16300 (ACNRMP_16300) rbsK 3482862..3483809 (-) 948 WP_011000965.1 ribokinase -
  ACNRMP_RS16305 (ACNRMP_16305) cytR 3483846..3484889 (-) 1044 WP_011000966.1 LacI family DNA-binding transcriptional regulator Regulator
  ACNRMP_RS16310 (ACNRMP_16310) - 3484909..3485955 (-) 1047 WP_020831548.1 ABC transporter permease -
  ACNRMP_RS16315 (ACNRMP_16315) - 3485945..3487516 (-) 1572 WP_028852851.1 sugar ABC transporter ATP-binding protein -
  ACNRMP_RS16320 (ACNRMP_16320) - 3487552..3488511 (-) 960 WP_028852852.1 sugar ABC transporter substrate-binding protein -
  ACNRMP_RS16325 (ACNRMP_16325) iscR 3488919..3489500 (+) 582 WP_011000970.1 Fe-S cluster assembly transcriptional regulator IscR -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37288.37 Da        Isoelectric Point: 6.9310

>NTDB_id=990729 ACNRMP_RS16305 WP_011000966.1 3483846..3484889(-) (cytR) [Ralstonia pseudosolanacearum strain PD 7123]
MATIKDVAALAGVSFTTVSHVINNTRPVNSETRKRVEEAIRATRYVPSAVARSLKHRTTRTIGVLVPTATNPYFAELARG
IEDVCAAAGYSVILCNSDDDPRKQRDYLRVLMEKRVDGLIVSSAGPDNALLDALGESALPVVMVDRPTEGILADQVQIDH
EEGAYLATRHLLELGHRRIACISGPSTLSVTAGRLAGFHRALREAGVPEHAARVAEGDFTSPGGYRAARELLTTGETPTA
IFASNDLMGIGALRAAAELGIAVPKELSIIGFDDIELSRYVYPALSTVGQSIRQLGETTASTLLEHLTDHAARHHHEIPD
APRRIVLPPRLSLRESTAEPARPARAA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=990729 ACNRMP_RS16305 WP_011000966.1 3483846..3484889(-) (cytR) [Ralstonia pseudosolanacearum strain PD 7123]
ATGGCCACTATCAAGGACGTTGCCGCATTAGCCGGGGTGTCATTCACCACCGTCTCGCATGTCATCAACAACACACGGCC
GGTCAACTCGGAAACGCGCAAGCGCGTGGAAGAGGCCATCCGCGCCACGCGCTATGTACCCAGCGCCGTAGCGCGCTCGC
TCAAGCACCGCACCACGCGCACCATCGGCGTGCTGGTGCCGACCGCCACCAACCCCTACTTCGCCGAACTGGCGCGCGGC
ATCGAAGACGTGTGCGCCGCGGCCGGCTACAGCGTCATCCTGTGCAACTCCGATGACGACCCCCGCAAGCAGCGCGACTA
CCTGCGCGTGCTGATGGAGAAGCGCGTCGACGGCCTCATCGTCAGCAGCGCCGGACCGGACAACGCGCTGCTCGATGCAC
TGGGCGAATCCGCGCTGCCCGTGGTGATGGTGGACCGTCCCACCGAGGGCATCCTGGCCGACCAGGTGCAGATCGACCAT
GAGGAAGGCGCCTACCTGGCGACCCGGCATCTGCTCGAGCTCGGGCACCGCCGCATTGCCTGCATCAGCGGACCGTCGAC
GCTGAGCGTGACCGCCGGGCGGCTGGCGGGCTTTCACCGGGCGCTGCGCGAAGCCGGCGTGCCCGAGCACGCCGCGCGCG
TGGCCGAAGGCGACTTCACCAGCCCCGGCGGCTACCGCGCCGCGCGCGAACTGCTGACCACCGGCGAAACGCCCACCGCC
ATCTTCGCCAGCAACGACCTGATGGGCATCGGCGCGCTGCGTGCGGCCGCCGAGCTGGGCATCGCGGTGCCGAAGGAACT
GTCCATCATCGGCTTCGACGACATCGAGCTGAGCCGCTATGTCTATCCGGCGCTGTCCACGGTGGGCCAGTCGATCCGGC
AACTGGGCGAGACTACGGCCTCGACCCTGCTCGAGCACCTGACCGATCACGCCGCGCGGCATCACCACGAGATCCCCGAC
GCGCCGCGCCGCATCGTGCTGCCGCCGCGCCTGTCGCTGCGCGAGTCGACCGCCGAGCCCGCACGCCCCGCGCGCGCGGC
CTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-337)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y0M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.012

98.559

0.375
  cytR Vibrio parahaemolyticus RIMD 2210633

36.55

98.559

0.36

Multiple sequence alignment