Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MasN3_RS12390 Genome accession   NZ_AP026966
Coordinates   2730322..2732676 (+) Length   784 a.a.
NCBI ID   WP_281914394.1    Uniprot ID   -
Organism   Massilia varians strain N-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2725322..2737676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MasN3_RS12375 (MasN3_24310) - 2727085..2728707 (+) 1623 WP_281914391.1 T6SS immunity protein Tli4 family protein -
  MasN3_RS12380 (MasN3_24320) - 2728776..2729888 (+) 1113 WP_281914392.1 T6SS immunity protein Tli4 family protein -
  MasN3_RS12385 (MasN3_24330) - 2729978..2730286 (+) 309 WP_281914393.1 PAAR domain-containing protein -
  MasN3_RS12390 (MasN3_24340) comA 2730322..2732676 (+) 2355 WP_281914394.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MasN3_RS12395 (MasN3_24350) - 2732814..2733647 (+) 834 WP_281914395.1 alpha/beta fold hydrolase -
  MasN3_RS12400 (MasN3_24360) dcd 2733685..2734251 (+) 567 WP_281914396.1 dCTP deaminase -
  MasN3_RS12405 (MasN3_24370) - 2734513..2734980 (+) 468 WP_370662385.1 cation transporter -
  MasN3_RS12410 (MasN3_24380) - 2735042..2737300 (-) 2259 WP_281914397.1 arginine/lysine/ornithine decarboxylase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 84102.63 Da        Isoelectric Point: 10.2815

>NTDB_id=99061 MasN3_RS12390 WP_281914394.1 2730322..2732676(+) (comA) [Massilia varians strain N-3]
MRCAILAFVAGVCWLQTRAELPPPAHLAGALVAALLLFTVRKFAATLLAAAILGVAWSAWLAHLALADVLPREQEGKDVA
VVGTVDSLPHEFDGGTRFNLRVERVLSPDATVPQRIAVSWYGQHAATDSQTPVQPGERWQLVVRLQRPHGNANPYGFDYE
AWLLEQGVRATGYVRPAGPRNVRLDAFVPRPAHVVERARAALRRHILQNMEGKRYAGVIVALVIGDQRGIVQSSWDVFNR
TGISHLVSISGLHITMIAALAAWAVSSLWRRSFFIEGAALPLRLPAQKAAALAGALVALVYVLLAGAGVPAQRTFYMLAS
VAAALWFGRVVALSHVLCLALAVVVLIDPWAVLGAGFWLSFGAVAVILYANLGRVEFATGWRRTLGAAVRTQYAVTVGLV
PLTMLLFAQVSLASPLANAVAIPVVSLFVTPLALLGALLPAPLAGWVLGLAHVAVELLADGLAWLAASPLAVVNAPAPQA
WIFVLALAGAAWMLAPRGWPHRWAGLAAWAPMLTQLPSAPPDGSFSVTAFDVGQGMALLVETGRHRLLYDAGPQYGPGAD
AAGRILLPYLRGRGIGALDALVVSHSDVDHAGGARTLLEGVTVAQVHSSLPGSHPVVRAARRHRRCDAGQEWHWDGVRFE
LLGPTPQSYQEAGLKANARSCVLRVSALGKAMLLAADIEAAQELQLLQTSPGRLRADVLLAPHHGSGTSSTAAFLAAVEP
TFGIFQVGYRNRYRHPKKEVYERYGSLGIRRLRTDESGAVTLHFGQTLDVGEFRSERRRYWHGR

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=99061 MasN3_RS12390 WP_281914394.1 2730322..2732676(+) (comA) [Massilia varians strain N-3]
ATGCGCTGCGCGATCCTCGCCTTCGTCGCCGGGGTGTGCTGGCTGCAGACGCGCGCCGAACTGCCGCCACCCGCCCACTT
GGCAGGCGCGCTTGTGGCGGCGCTGCTCTTGTTCACAGTGCGCAAATTCGCCGCGACCCTGCTCGCCGCCGCCATCCTCG
GCGTAGCATGGTCGGCCTGGCTGGCCCACCTCGCCCTGGCCGACGTGCTGCCGCGCGAGCAGGAAGGCAAAGACGTCGCC
GTCGTCGGCACCGTCGACAGCCTGCCGCATGAATTCGACGGTGGGACACGCTTCAACCTGCGCGTCGAACGGGTCCTGAG
CCCGGACGCCACGGTCCCGCAGCGCATCGCCGTCTCCTGGTACGGGCAGCATGCGGCCACGGACAGCCAGACGCCTGTGC
AGCCCGGCGAGCGCTGGCAGCTGGTGGTGCGCCTGCAGCGACCGCACGGCAATGCCAACCCCTACGGCTTCGACTACGAA
GCCTGGTTGCTCGAGCAGGGCGTGCGCGCCACCGGCTACGTCCGTCCCGCCGGGCCGCGCAACGTCCGGCTCGACGCCTT
CGTGCCGCGTCCCGCACACGTGGTGGAACGCGCTCGCGCCGCACTGCGCCGCCACATCCTGCAGAACATGGAGGGCAAGC
GCTACGCCGGGGTGATCGTGGCCCTGGTGATCGGCGACCAGCGCGGCATTGTGCAGTCGAGCTGGGACGTCTTCAACCGC
ACCGGCATCAGCCACCTGGTGTCGATCTCAGGCCTGCACATCACGATGATCGCGGCCCTGGCGGCATGGGCGGTATCCAG
CCTGTGGCGGCGCTCCTTCTTCATCGAGGGCGCCGCCTTGCCCTTGCGCCTGCCGGCCCAGAAGGCCGCGGCGCTCGCCG
GGGCGCTGGTGGCGCTCGTGTACGTGCTGCTGGCCGGCGCCGGCGTGCCCGCGCAGCGCACCTTCTACATGCTGGCGTCC
GTGGCGGCCGCATTGTGGTTCGGGCGGGTGGTGGCGCTGTCGCACGTGCTGTGCCTGGCCCTGGCCGTGGTGGTGCTGAT
CGATCCCTGGGCCGTGCTGGGGGCCGGTTTCTGGCTGTCGTTCGGTGCGGTGGCCGTGATCCTGTACGCCAATCTCGGGC
GGGTGGAGTTCGCCACCGGATGGCGGCGCACCCTCGGCGCGGCCGTCCGTACCCAATACGCGGTGACTGTCGGCCTGGTG
CCGCTGACCATGCTGCTGTTCGCGCAGGTGTCGCTCGCCAGCCCGCTCGCGAACGCGGTCGCGATTCCCGTGGTCAGCCT
GTTCGTCACGCCGCTGGCGCTGCTCGGGGCGCTGCTGCCGGCGCCGCTGGCGGGTTGGGTGCTCGGGCTTGCGCACGTGG
CGGTCGAACTGCTGGCAGACGGATTGGCCTGGCTGGCGGCCAGCCCGCTGGCGGTCGTGAACGCGCCGGCGCCGCAGGCG
TGGATCTTCGTGCTGGCGCTTGCCGGTGCCGCGTGGATGCTGGCGCCGCGCGGCTGGCCGCATCGCTGGGCAGGCCTGGC
CGCCTGGGCGCCGATGCTGACCCAGCTGCCGAGCGCGCCGCCTGACGGCAGCTTCTCGGTAACCGCCTTCGATGTGGGGC
AGGGCATGGCCCTGCTGGTCGAGACCGGGCGTCACCGGCTGCTCTACGATGCCGGTCCGCAGTACGGGCCGGGGGCGGAC
GCGGCCGGCCGCATCCTGCTGCCTTACCTGCGCGGGCGCGGCATCGGCGCGCTCGATGCGCTGGTCGTCTCGCACAGCGA
CGTCGACCACGCCGGCGGCGCCCGCACCCTGCTCGAGGGCGTGACGGTGGCGCAAGTGCACTCCTCGCTGCCCGGCAGCC
ATCCGGTGGTGCGCGCCGCGCGCCGTCACCGGCGCTGCGATGCCGGCCAGGAGTGGCACTGGGATGGCGTCCGCTTCGAG
TTGCTCGGGCCGACGCCGCAGTCCTACCAGGAAGCGGGATTGAAGGCCAATGCGCGCAGCTGCGTGCTGCGCGTCAGCGC
GCTTGGCAAGGCCATGTTGCTGGCGGCCGACATCGAGGCGGCCCAGGAGCTGCAGCTGCTGCAAACCTCGCCCGGCCGGC
TGCGCGCCGACGTGCTGCTGGCGCCCCACCACGGCAGCGGCACCTCGTCCACCGCCGCCTTCCTGGCCGCGGTAGAACCG
ACGTTCGGCATCTTCCAGGTGGGCTACCGCAACCGCTACCGCCACCCCAAGAAGGAGGTCTACGAGCGCTACGGCAGCCT
GGGCATCCGCAGGCTGCGCACCGACGAATCGGGCGCGGTGACGCTGCATTTCGGCCAGACGCTGGACGTCGGCGAGTTTC
GCAGCGAGCGGCGGCGCTACTGGCACGGCCGCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(222-498)

Metallo-beta-lactamase superfamily (Lactamase_B)

(532-620)

Domain of unknown function (DUF4131) (DUF4131)

(25-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

48.309

100

0.51

Multiple sequence alignment