Detailed information NTG0990571

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: O2W21_RS07390
• Genome accession: NZ_JAPVBX010000001
• Coordinates: 1520945..1521937 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain KE21
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1515945..1526937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O2W21_RS07370 (O2W21_07355)	ygbM	1516583..1517359 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
O2W21_RS07375 (O2W21_07360)	ygbN	1517448..1518812 (+)	1365	WP_000104433.1	GntP family transporter	-
O2W21_RS07380 (O2W21_07365)	-	1518955..1519998 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
O2W21_RS07385 (O2W21_07370)	-	1520223..1520774 (+)	552	WP_001179444.1	flavodoxin family protein	-
O2W21_RS07390 (O2W21_07375)	rpoS	1520945..1521937 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
O2W21_RS07395 (O2W21_07380)	nlpD	1522000..1523094 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
O2W21_RS07400 (O2W21_07385)	pcm	1523279..1523905 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
O2W21_RS07405 (O2W21_07390)	surE	1523899..1524660 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
O2W21_RS07410 (O2W21_07395)	truD	1524641..1525690 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
O2W21_RS07415 (O2W21_07400)	ispF	1525687..1526166 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
O2W21_RS07420 (O2W21_07405)	ispD	1526166..1526876 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=990571 O2W21_RS07390 WP_000081550.1 1520945..1521937(-) (rpoS) [Escherichia coli strain KE21]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=990571 O2W21_RS07390 WP_000081550.1 1520945..1521937(-) (rpoS) [Escherichia coli strain KE21]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715