Detailed information NTG0990413

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: MWH27_RS13385
• Genome accession: NZ_JALJVV010000001
• Coordinates: 2475038..2476165 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain A-5
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2470038..2481165

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MWH27_RS13360 (MWH27_13335)	-	2470085..2470297 (-)	213	Protein_2580	recombinase family protein	-
MWH27_RS13365 (MWH27_13340)	fumC	2470516..2471904 (-)	1389	WP_014480325.1	class II fumarate hydratase	-
MWH27_RS13370 (MWH27_13345)	-	2472071..2472961 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
MWH27_RS13375 (MWH27_13350)	-	2473903..2474298 (+)	396	WP_014480327.1	VOC family protein	-
MWH27_RS13385 (MWH27_13360)	rapC	2475038..2476165 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
MWH27_RS22515	-	2476347..2478273 (+)	1927	Protein_2585	ribonuclease YeeF family protein	-
MWH27_RS13400 (MWH27_13375)	-	2478287..2478574 (+)	288	WP_014480331.1	hypothetical protein	-
MWH27_RS13405 (MWH27_13380)	-	2478977..2479417 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
MWH27_RS13410 (MWH27_13385)	-	2479516..2479968 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
MWH27_RS13415 (MWH27_13390)	cdiI	2480065..2480424 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
MWH27_RS13420 (MWH27_13395)	-	2480529..2481008 (+)	480	WP_224588637.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=990413 MWH27_RS13385 WP_014480328.1 2475038..2476165(-) (rapC) [Bacillus subtilis strain A-5]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=990413 MWH27_RS13385 WP_014480328.1 2475038..2476165(-) (rapC) [Bacillus subtilis strain A-5]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397