Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J5312_RS10545 Genome accession   NZ_JAGFUR010000001
Coordinates   2093048..2094397 (-) Length   449 a.a.
NCBI ID   WP_079206950.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190502E1-H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2088048..2099397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5312_RS10525 (J5312_10525) - 2088350..2089780 (-) 1431 WP_064970600.1 redoxin domain-containing protein -
  J5312_RS10530 (J5312_10530) - 2089995..2090840 (+) 846 WP_064970602.1 GLPGLI family protein -
  J5312_RS10535 (J5312_10535) - 2090882..2091346 (-) 465 WP_214193861.1 heme-binding domain-containing protein -
  J5312_RS10540 (J5312_10540) - 2091358..2093001 (-) 1644 WP_214193862.1 Ig-like domain-containing protein -
  J5312_RS10545 (J5312_10545) radA 2093048..2094397 (-) 1350 WP_079206950.1 DNA repair protein RadA Machinery gene
  J5312_RS10550 (J5312_10550) - 2094490..2095254 (+) 765 WP_214193863.1 enoyl-CoA hydratase/isomerase family protein -
  J5312_RS10555 (J5312_10555) - 2095289..2096224 (-) 936 WP_064970613.1 nitronate monooxygenase family protein -
  J5312_RS10560 (J5312_10560) - 2096400..2097278 (+) 879 WP_127919812.1 IS982-like element ISRa1 family transposase -
  J5312_RS10565 (J5312_10565) - 2097318..2098712 (-) 1395 WP_064970357.1 DUF5689 domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49680.19 Da        Isoelectric Point: 7.4843

>NTDB_id=990221 J5312_RS10545 WP_079206950.1 2093048..2094397(-) (radA) [Riemerella anatipestifer strain 20190502E1-H1]
MAKLKTVYYCQNCGSQHSKWHGQCQNCGQWNTLVEEIAEKTTSKNYAGDFGRQHLINIIEVETQAEQRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLYTETSIEKILHEAKKL
QPDFMIVDSIQTLHSQVMESSPGTVSQIRECASEVIKFAKATNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMISAGLKEIKNPSEVLITKKSEEFSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRSGFQLGAKDVFLNITGGIKTDDPALDLAVVAAILSSNEDIAVSEHYCFAGEIGLSGEIRPV
PQIEKRISEAEKLGYHKIFVSKQNKIPKKKHNIKIVEVSKIEDFHEEIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=990221 J5312_RS10545 WP_079206950.1 2093048..2094397(-) (radA) [Riemerella anatipestifer strain 20190502E1-H1]
GTGGCTAAATTAAAAACAGTATATTATTGTCAGAATTGTGGTTCACAACATTCCAAATGGCACGGGCAATGCCAAAATTG
TGGACAATGGAATACCTTAGTGGAAGAGATTGCAGAAAAAACAACCTCTAAAAATTATGCAGGAGATTTTGGAAGGCAAC
ACCTCATCAATATCATAGAAGTAGAAACACAAGCTGAACAACGCATTAAAACTCCAAGCGAAGAACTTAACAGAGTTTTG
GGTGGCGGTATTGTTTTAGGTTCGGTAACTCTTATCGGAGGCGAACCAGGTATAGGGAAATCTACATTACTGTTGCAATT
AGCCCTTAAAATGAAGAAAAAAATCCTCTATGTTTCTGGGGAAGAAAGTGCCTCTCAAATCAAAATGAGAGCAGATAGAT
TAACGGAACTCCAAAATCCGAATTGTTTTTTATACACTGAAACTTCAATAGAGAAAATCTTACACGAAGCCAAAAAACTT
CAGCCCGATTTTATGATTGTGGACTCTATACAAACCTTACATTCGCAGGTGATGGAGAGTTCCCCAGGTACAGTGTCTCA
GATTAGAGAATGTGCTTCGGAAGTTATAAAATTTGCAAAAGCGACTAACACGCCTGTTTTTTTAGTGGGACATATTACTA
AAGATGGACAAATAGCGGGACCAAAAGTGTTGGAGCATATGGTAGATGTAGTTCTTAATTTTGATGGTGATAGAAACCAC
TTATTTAGACTTTTAAGAGCAAATAAAAATCGTTTTGGTTCTACTGCGGAGATTGGTATTTATGAGATGATTTCAGCAGG
ATTGAAAGAAATTAAAAATCCTTCGGAAGTGCTTATTACCAAAAAATCCGAAGAGTTTTCAGGTAATGCGGTGGCAGTAA
CGCTAGAAGGTAACCGCCCTATGTTGCTAGAAATACAAGCCCTCGTAAGTACAGCGGTGTATGGTACACCACAGAGAAGT
TCTACGGGTTTTGATGCTAAAAGGCTCAATATGCTTTTGGCGGTTTTGGAGAAACGTTCTGGCTTTCAACTTGGGGCTAA
AGATGTATTTTTAAATATTACTGGAGGTATTAAAACGGACGACCCCGCTCTAGATTTGGCTGTAGTTGCCGCTATCTTAT
CTTCCAACGAGGATATTGCAGTATCGGAGCATTATTGTTTTGCTGGGGAAATTGGTCTTAGTGGAGAAATTCGTCCTGTG
CCACAAATAGAAAAACGCATCTCCGAAGCCGAAAAATTAGGCTATCATAAGATATTTGTTTCTAAACAAAATAAAATACC
AAAGAAAAAACACAATATAAAAATTGTGGAAGTTTCTAAAATAGAAGACTTTCACGAAGAAATATTTTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(336-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

47.473

100

0.481
  radA Streptococcus pneumoniae Rx1

47.368

100

0.481
  radA Streptococcus pneumoniae D39

47.368

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.368

100

0.481
  radA Streptococcus pneumoniae R6

47.368

100

0.481
  radA Streptococcus mitis SK321

47.241

100

0.477
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.611

96.214

0.468

Multiple sequence alignment