Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACAM36_RS09155 Genome accession   NZ_AP031604
Coordinates   1966082..1966411 (+) Length   109 a.a.
NCBI ID   WP_023109812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate PaSz     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1961082..1971411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM36_RS09140 - 1961782..1962741 (+) 960 WP_004350973.1 SDR family oxidoreductase -
  ACAM36_RS09145 (RVB5_18160) - 1962738..1963763 (+) 1026 WP_004350972.1 glycosyltransferase family 4 protein -
  ACAM36_RS09150 (RVB5_18170) - 1963894..1965891 (+) 1998 WP_023091542.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ACAM36_RS09155 (RVB5_18180) comEA/comE1 1966082..1966411 (+) 330 WP_023109812.1 ComEA family DNA-binding protein Machinery gene
  ACAM36_RS09165 (RVB5_18190) - 1966628..1967824 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  ACAM36_RS09170 (RVB5_18200) uvrB 1968012..1970024 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=99003 ACAM36_RS09155 WP_023109812.1 1966082..1966411(+) (comEA/comE1) [Pseudomonas aeruginosa isolate PaSz]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=99003 ACAM36_RS09155 WP_023109812.1 1966082..1966411(+) (comEA/comE1) [Pseudomonas aeruginosa isolate PaSz]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCAGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment