Detailed information NTG0990027

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LLO83_RS05580
• Genome accession: NZ_HG994850
• Coordinates: 1172453..1173445 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate 127
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1167453..1178445

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLO83_RS05550 (AI2831V1_1081)	ispD	1167514..1168224 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LLO83_RS05555 (AI2831V1_1082)	ispF	1168224..1168703 (+)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LLO83_RS05560 (AI2831V1_1083)	truD	1168700..1169749 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
LLO83_RS05565 (AI2831V1_1084)	surE	1169730..1170491 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
LLO83_RS05570 (AI2831V1_1085)	pcm	1170485..1171111 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
LLO83_RS05575 (AI2831V1_1086)	nlpD	1171296..1172390 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
LLO83_RS05580 (AI2831V1_1087)	rpoS	1172453..1173445 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
LLO83_RS05585 (AI2831V1_1088)	-	1173623..1174174 (-)	552	WP_001179442.1	flavodoxin family protein	-
LLO83_RS05590 (AI2831V1_1089)	-	1174399..1175442 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
LLO83_RS05595 (AI2831V1_1090)	ygbN	1175585..1176949 (-)	1365	WP_000104433.1	GntP family transporter	-
LLO83_RS05600 (AI2831V1_1091)	ygbM	1177038..1177814 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=990027 LLO83_RS05580 WP_000081550.1 1172453..1173445(+) (rpoS) [Escherichia coli isolate 127]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=990027 LLO83_RS05580 WP_000081550.1 1172453..1173445(+) (rpoS) [Escherichia coli isolate 127]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGTAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715