Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OPA57_RS15105 Genome accession   NZ_AP026940
Coordinates   3105735..3106349 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CF20-4P-1 isolate gut contents of Mastacembelus     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3100735..3111349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPA57_RS15090 (CF204P1_29390) helD 3100959..3103013 (-) 2055 WP_106107455.1 DNA helicase IV -
  OPA57_RS15095 (CF204P1_29400) - 3103139..3103585 (+) 447 WP_003035892.1 YccF domain-containing protein -
  OPA57_RS15100 (CF204P1_29410) yccS 3103604..3105757 (+) 2154 WP_032941200.1 YccS family putative transporter -
  OPA57_RS15105 (CF204P1_29420) sxy/tfoX 3105735..3106349 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  OPA57_RS15110 (CF204P1_29430) sulA 3106567..3107076 (+) 510 WP_003836838.1 SOS-induced cell division inhibitor SulA -
  OPA57_RS15115 (CF204P1_29440) ompA 3107434..3108492 (+) 1059 WP_003836839.1 porin OmpA -
  OPA57_RS15120 tnpA 3108579..3109013 (-) 435 WP_041162689.1 IS200/IS605 family transposase -
  OPA57_RS15125 (CF204P1_29450) matP 3109212..3109664 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=98996 OPA57_RS15105 WP_003035889.1 3105735..3106349(-) (sxy/tfoX) [Citrobacter freundii strain CF20-4P-1 isolate gut contents of Mastacembelus]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=98996 OPA57_RS15105 WP_003035889.1 3105735..3106349(-) (sxy/tfoX) [Citrobacter freundii strain CF20-4P-1 isolate gut contents of Mastacembelus]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAAGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment