Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   EC958_RS16985 Genome accession   NZ_HG941718
Coordinates   3370209..3371405 (+) Length   398 a.a.
NCBI ID   WP_001161853.1    Uniprot ID   -
Organism   Escherichia coli O25b:H4-ST131 strain EC958     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3365209..3376405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC958_RS16970 (EC958_3335) - 3365724..3367400 (+) 1677 WP_001296395.1 polysaccharide biosynthesis/export family protein -
  EC958_RS16975 (EC958_3336) kdsB 3367410..3368150 (+) 741 WP_000030748.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EC958_RS16980 (EC958_3337) - 3368147..3370174 (+) 2028 WP_000579251.1 capsular polysaccharide biosynthesis protein -
  EC958_RS16985 (EC958_3338) kpsS 3370209..3371405 (+) 1197 WP_001161853.1 capsular biosynthesis protein Regulator
  EC958_RS16990 (EC958_3339) - 3371606..3372742 (-) 1137 WP_000115757.1 hypothetical protein -
  EC958_RS16995 (EC958_3340) - 3372759..3374132 (-) 1374 WP_001546116.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 47279.63 Da        Isoelectric Point: 10.0630

>NTDB_id=989959 EC958_RS16985 WP_001161853.1 3370209..3371405(+) (kpsS) [Escherichia coli O25b:H4-ST131 strain EC958]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLTPSTM
KRIGHAMWYYLIGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGGRCFTITL

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=989959 EC958_RS16985 WP_001161853.1 3370209..3371405(+) (kpsS) [Escherichia coli O25b:H4-ST131 strain EC958]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTCGCCGAGTGGCTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTATTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACATTATCTGGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGACACTATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGTATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCATGTTGAGAACTTAACACCTTCAACAATG
AAACGTATTGGCCATGCGATGTGGTATTACCTGATAGGCTGGCATTACCGTCATGAGTTTCCTCGCTATCGCCATCACAA
ATCATTTTCTCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTACGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTTAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGGTAGATGTTTTACCATAACATTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

97.739

0.392

Multiple sequence alignment