Detailed information NTG0989954

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EC958_RS15260
• Genome accession: NZ_HG941718
• Coordinates: 3007365..3008357 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O25b:H4-ST131 strain EC958
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3002365..3013357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EC958_RS15240 (EC958_3007)	ygbM	3003003..3003779 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
EC958_RS15245 (EC958_3008)	ygbN	3003868..3005232 (+)	1365	WP_000104433.1	GntP family transporter	-
EC958_RS15250 (EC958_3009)	-	3005375..3006418 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
EC958_RS15255 (EC958_3011)	-	3006643..3007194 (+)	552	WP_001179444.1	flavodoxin family protein	-
EC958_RS15260 (EC958_3012)	rpoS	3007365..3008357 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EC958_RS15265 (EC958_3013)	nlpD	3008420..3009514 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
EC958_RS15270 (EC958_3014)	pcm	3009699..3010325 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EC958_RS15275 (EC958_3015)	surE	3010319..3011080 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EC958_RS15280 (EC958_3016)	truD	3011061..3012110 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
EC958_RS15285 (EC958_3017)	ispF	3012107..3012586 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EC958_RS15290 (EC958_3018)	ispD	3012586..3013296 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=989954 EC958_RS15260 WP_000081550.1 3007365..3008357(-) (rpoS) [Escherichia coli O25b:H4-ST131 strain EC958]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=989954 EC958_RS15260 WP_000081550.1 3007365..3008357(-) (rpoS) [Escherichia coli O25b:H4-ST131 strain EC958]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715