Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   GBSCOH1_RS06325 Genome accession   NZ_HG939456
Coordinates   1252233..1252673 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae COH1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1247233..1257673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS06310 (GBSCOH1_1189) - 1247891..1248517 (-) 627 WP_000449644.1 GTP pyrophosphokinase family protein -
  GBSCOH1_RS06315 (GBSCOH1_1190) rcrQ 1248625..1250379 (-) 1755 WP_000851088.1 ABC transporter ATP-binding protein Regulator
  GBSCOH1_RS06320 (GBSCOH1_1191) rcrP 1250369..1252186 (-) 1818 WP_000481812.1 ABC transporter ATP-binding protein Regulator
  GBSCOH1_RS06325 (GBSCOH1_1192) rcrR 1252233..1252673 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  GBSCOH1_RS06330 (GBSCOH1_1193) - 1252942..1255014 (+) 2073 WP_000726928.1 surface-anchored 5'-nucleotidase -
  GBSCOH1_RS06335 (GBSCOH1_1194) - 1255051..1255461 (-) 411 WP_000594935.1 peptide deformylase -
  GBSCOH1_RS06340 (GBSCOH1_1195) gdhA 1255531..1256880 (-) 1350 WP_000200442.1 NADP-specific glutamate dehydrogenase -
  GBSCOH1_RS06345 (GBSCOH1_1196) - 1257048..1257557 (+) 510 WP_000870956.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=989884 GBSCOH1_RS06325 WP_000431168.1 1252233..1252673(-) (rcrR) [Streptococcus agalactiae COH1]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=989884 GBSCOH1_RS06325 WP_000431168.1 1252233..1252673(-) (rcrR) [Streptococcus agalactiae COH1]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATTTCTAAGTCTGTAGCGTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411