Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   GBSCOH1_RS05890 Genome accession   NZ_HG939456
Coordinates   1157513..1157995 (-) Length   160 a.a.
NCBI ID   WP_000163512.1    Uniprot ID   Q8DZB3
Organism   Streptococcus agalactiae COH1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1152513..1162995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS05870 (GBSCOH1_1098) alsS 1152772..1154454 (-) 1683 WP_000140341.1 acetolactate synthase AlsS -
  GBSCOH1_RS05875 (GBSCOH1_1099) - 1154564..1155790 (-) 1227 WP_000934868.1 tetratricopeptide repeat protein -
  GBSCOH1_RS05880 (GBSCOH1_1100) - 1155780..1156970 (-) 1191 WP_001075588.1 AI-2E family transporter -
  GBSCOH1_RS05885 (GBSCOH1_1101) - 1157062..1157523 (-) 462 WP_000796047.1 NUDIX hydrolase -
  GBSCOH1_RS05890 (GBSCOH1_1102) mutX 1157513..1157995 (-) 483 WP_000163512.1 NUDIX hydrolase Machinery gene
  GBSCOH1_RS05895 (GBSCOH1_1103) hylB 1158212..1161430 (+) 3219 WP_000403410.1 hyaluronate lyase -
  GBSCOH1_RS05900 (GBSCOH1_1104) rfbB 1161482..1162528 (-) 1047 WP_000134275.1 dTDP-glucose 4,6-dehydratase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18837.23 Da        Isoelectric Point: 4.5116

>NTDB_id=989877 GBSCOH1_RS05890 WP_000163512.1 1157513..1157995(-) (mutX) [Streptococcus agalactiae COH1]
MTKLATICYIDNGKELLLLHRNKKENDVHEGKWISVGGKLEAGETPDECAKREILEETHLTVKKMDFKGVITFPEFTPGH
DWYTYVFKVTDYEGELISDDESREGTLEWVPYDQVLSKPTWQGDYEIFKWILEDVPFFSAKFVYDEHQNLIEKTVNFYEK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=989877 GBSCOH1_RS05890 WP_000163512.1 1157513..1157995(-) (mutX) [Streptococcus agalactiae COH1]
ATGACTAAATTAGCAACAATTTGTTACATTGACAATGGCAAGGAATTACTTCTATTGCATCGCAACAAAAAAGAGAATGA
TGTTCATGAGGGAAAGTGGATCTCGGTAGGCGGTAAACTGGAGGCAGGTGAAACTCCGGATGAATGTGCTAAGCGTGAAA
TTCTAGAAGAAACCCATTTAACAGTAAAAAAAATGGATTTTAAAGGAGTCATCACTTTTCCTGAATTTACGCCAGGTCAT
GATTGGTATACCTATGTCTTTAAAGTAACAGATTATGAAGGAGAGTTAATTTCAGATGATGAATCACGAGAAGGAACCTT
AGAATGGGTACCATATGATCAAGTTCTCTCTAAGCCAACGTGGCAAGGAGATTACGAAATTTTTAAATGGATTTTAGAAG
ATGTTCCTTTCTTTTCTGCTAAGTTTGTTTATGATGAACACCAAAATTTAATTGAAAAGACGGTTAATTTTTATGAAAAA
TAG

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DZB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.698

99.375

0.712