Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GBSCOH1_RS04850 Genome accession   NZ_HG939456
Coordinates   948190..949260 (-) Length   356 a.a.
NCBI ID   WP_000817931.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 943190..954260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS04830 (GBSCOH1_0893) - 943725..944477 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  GBSCOH1_RS04835 (GBSCOH1_0894) - 944479..946434 (+) 1956 WP_000499553.1 FtsX-like permease family protein -
  GBSCOH1_RS04840 (GBSCOH1_0895) braR 946544..947212 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  GBSCOH1_RS04845 (GBSCOH1_0896) - 947209..948147 (+) 939 WP_000620981.1 sensor histidine kinase -
  GBSCOH1_RS04850 (GBSCOH1_0897) xerS 948190..949260 (-) 1071 WP_000817931.1 tyrosine recombinase XerS Machinery gene
  GBSCOH1_RS04855 (GBSCOH1_0898) - 949645..951240 (+) 1596 WP_000093958.1 peptide ABC transporter substrate-binding protein -
  GBSCOH1_RS04860 (GBSCOH1_0899) - 951273..952046 (-) 774 WP_000622399.1 DUF3307 domain-containing protein -
  GBSCOH1_RS04865 (GBSCOH1_0900) - 952036..952722 (-) 687 WP_000280311.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41377.55 Da        Isoelectric Point: 9.3616

>NTDB_id=989870 GBSCOH1_RS04850 WP_000817931.1 948190..949260(-) (xerS) [Streptococcus agalactiae COH1]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDSSSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=989870 GBSCOH1_RS04850 WP_000817931.1 948190..949260(-) (xerS) [Streptococcus agalactiae COH1]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCTCTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATTCTTCAAGTGTAGAGAAAATGGTTGCTA
AGTATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(184-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834