Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GBSCOH1_RS02390 Genome accession   NZ_HG939456
Coordinates   425183..425959 (-) Length   258 a.a.
NCBI ID   WP_000704971.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 420183..430959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS02385 (GBSCOH1_0389) - 424566..425099 (-) 534 WP_001239184.1 DUF402 domain-containing protein -
  GBSCOH1_RS02390 (GBSCOH1_0390) recX 425183..425959 (-) 777 WP_000704971.1 recombination regulator RecX Regulator
  GBSCOH1_RS02395 (GBSCOH1_0391) rlmD 426058..427413 (+) 1356 WP_001103613.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  GBSCOH1_RS02400 (GBSCOH1_0392) - 427681..427899 (+) 219 Protein_389 hypothetical protein -
  GBSCOH1_RS02405 (GBSCOH1_0393) - 427929..428234 (+) 306 WP_001879018.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30699.63 Da        Isoelectric Point: 9.7750

>NTDB_id=989845 GBSCOH1_RS02390 WP_000704971.1 425183..425959(-) (recX) [Streptococcus agalactiae COH1]
MKITKIEKKKRLYTLELDNTENLYITEDTIVHFMLSKGMIINAEKLENIKKFAQLSYGKNLGLYYISFKQRTEKEVIKYL
QEHDIDSKIIPQIIDNLKSENWINDKNYVQSFIQQNLNNGDKGPYVIKQKLLQKGIKSKIIESELKAINFQDLASKISQK
LYKKYQNKLPLKALKDKLMQSLTTKGFDYQIGHTVIQNLEIEKDQELEDDLIYKELDKQYQKLSKKHDQYELKQRIINVL
MRKGYQYEDIKSALREYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=989845 GBSCOH1_RS02390 WP_000704971.1 425183..425959(-) (recX) [Streptococcus agalactiae COH1]
ATGAAAATAACCAAAATCGAAAAGAAAAAAAGACTTTACACTCTAGAGCTAGACAATACCGAAAATTTATATATAACAGA
AGATACTATCGTTCATTTTATGTTAAGTAAAGGGATGATAATTAATGCCGAGAAACTTGAAAATATTAAAAAATTTGCCC
AACTATCATACGGTAAAAATCTAGGTCTTTATTATATTTCTTTCAAGCAGAGAACCGAGAAAGAAGTTATTAAATATCTT
CAAGAACATGATATTGATTCTAAAATTATTCCACAAATTATTGATAATCTAAAAAGTGAGAATTGGATAAACGATAAAAA
CTACGTGCAATCTTTCATACAGCAAAATCTAAATAATGGCGATAAGGGGCCATACGTGATAAAACAAAAATTATTGCAAA
AAGGTATCAAAAGTAAAATAATTGAATCTGAACTTAAAGCTATAAACTTTCAAGACTTAGCATCCAAAATAAGCCAAAAA
CTCTATAAAAAATATCAAAACAAACTTCCACTAAAAGCATTAAAAGATAAATTGATGCAGAGCTTAACTACAAAAGGATT
TGATTATCAGATAGGGCATACCGTAATTCAAAACCTTGAAATTGAAAAAGATCAAGAACTTGAAGATGACCTCATTTATA
AAGAATTAGATAAACAATACCAAAAATTATCAAAAAAACATGACCAGTATGAATTAAAGCAACGTATAATCAATGTCTTA
ATGCGTAAAGGATACCAGTACGAAGATATCAAAAGTGCTTTAAGAGAATATTTATAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

38.314

100

0.388