Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GBSCOH1_RS00260 Genome accession   NZ_HG939456
Coordinates   32672..33433 (+) Length   253 a.a.
NCBI ID   WP_001266276.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27672..38433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS00245 (GBSCOH1_0016) - 28982..30307 (+) 1326 WP_000746088.1 CHAP domain-containing protein -
  GBSCOH1_RS00250 (GBSCOH1_0017) - 30431..31399 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  GBSCOH1_RS00255 (GBSCOH1_0018) - 31507..32682 (+) 1176 WP_000171461.1 pyridoxal phosphate-dependent aminotransferase -
  GBSCOH1_RS00260 (GBSCOH1_0019) recO 32672..33433 (+) 762 WP_001266276.1 DNA repair protein RecO Machinery gene
  GBSCOH1_RS00265 (GBSCOH1_0020) - 33496..34374 (+) 879 WP_000420123.1 CPBP family intramembrane glutamic endopeptidase -
  GBSCOH1_RS00270 (GBSCOH1_0021) plsX 34452..35444 (+) 993 WP_000717414.1 phosphate acyltransferase PlsX -
  GBSCOH1_RS00275 (GBSCOH1_0022) - 35455..35694 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  GBSCOH1_RS00280 (GBSCOH1_0023) purC 35818..36522 (+) 705 WP_000184490.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29682.08 Da        Isoelectric Point: 6.1551

>NTDB_id=989819 GBSCOH1_RS00260 WP_001266276.1 32672..33433(+) (recO) [Streptococcus agalactiae COH1]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
TNSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFYDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=989819 GBSCOH1_RS00260 WP_001266276.1 32672..33433(+) (recO) [Streptococcus agalactiae COH1]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGACGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGAATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ACCAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTTATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.71

98.024

0.625