Detailed information NTG0989803

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BN896_RS19340
• Genome accession: NZ_HG738867
• Coordinates: 3916230..3917222 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli str. K-12 substr. MC4100 strain K-12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3911230..3922222

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BN896_RS19310 (BN896_2483)	ispD	3911291..3912001 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BN896_RS19315 (BN896_2482)	ispF	3912001..3912480 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BN896_RS19320 (BN896_2481)	truD	3912477..3913526 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BN896_RS19325 (BN896_2480)	surE	3913507..3914268 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BN896_RS19330 (BN896_2479)	pcm	3914262..3914888 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BN896_RS19335 (BN896_2478)	nlpD	3915073..3916167 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
BN896_RS19340 (BN896_2477)	rpoS	3916230..3917222 (+)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
BN896_RS19345 (BN896_2476)	ygbN	3917316..3918680 (-)	1365	WP_000104441.1	GntP family transporter	-
BN896_RS19350 (BN896_2475)	ygbM	3918769..3919545 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
BN896_RS19355 (BN896_2474)	ygbL	3919550..3920188 (-)	639	WP_001278994.1	aldolase	-
BN896_RS19360 (BN896_2473)	otnK	3920280..3921446 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=989803 BN896_RS19340 WP_000081588.1 3916230..3917222(+) (rpoS) [Escherichia coli str. K-12 substr. MC4100 strain K-12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=989803 BN896_RS19340 WP_000081588.1 3916230..3917222(+) (rpoS) [Escherichia coli str. K-12 substr. MC4100 strain K-12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715