Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BCC1697_RS16860 | Genome accession | NZ_CP152482 |
| Coordinates | 3724500..3725684 (+) | Length | 394 a.a. |
| NCBI ID | WP_123036054.1 | Uniprot ID | - |
| Organism | Burkholderia gladioli strain BCC1697 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3719500..3730684
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCC1697_RS16830 (BCC1697_003231) | - | 3720118..3720732 (+) | 615 | WP_013699419.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| BCC1697_RS16835 (BCC1697_003232) | pth | 3720829..3721434 (+) | 606 | WP_025097010.1 | aminoacyl-tRNA hydrolase | - |
| BCC1697_RS16840 (BCC1697_003233) | hisC | 3721530..3722597 (+) | 1068 | WP_036036216.1 | histidinol-phosphate transaminase | - |
| BCC1697_RS16845 (BCC1697_003234) | - | 3722744..3723016 (-) | 273 | WP_013699422.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| BCC1697_RS16850 (BCC1697_003235) | coaD | 3723083..3723583 (-) | 501 | WP_036036217.1 | pantetheine-phosphate adenylyltransferase | - |
| BCC1697_RS16855 (BCC1697_003236) | rsmD | 3723695..3724309 (-) | 615 | WP_036036218.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| BCC1697_RS16860 (BCC1697_003237) | pilA | 3724500..3725684 (+) | 1185 | WP_123036054.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| BCC1697_RS16865 (BCC1697_003238) | maiA | 3725757..3726401 (-) | 645 | WP_160639372.1 | maleylacetoacetate isomerase | - |
| BCC1697_RS16870 (BCC1697_003239) | ybiB | 3726615..3727595 (+) | 981 | WP_186114051.1 | DNA-binding protein YbiB | - |
| BCC1697_RS16875 (BCC1697_003240) | leuA | 3728095..3729747 (+) | 1653 | WP_060002660.1 | 2-isopropylmalate synthase | - |
| BCC1697_RS16880 (BCC1697_003241) | - | 3729930..3730316 (-) | 387 | WP_025097018.1 | nuclear transport factor 2 family protein | - |
Sequence
Protein
Download Length: 394 a.a. Molecular weight: 41443.49 Da Isoelectric Point: 4.8045
>NTDB_id=989671 BCC1697_RS16860 WP_123036054.1 3724500..3725684(+) (pilA) [Burkholderia gladioli strain BCC1697]
MFSFFKRLIGSKADGAPTDDPDAPTDRQDNAEAPAAEAARPVERVTAPAPAPAVPVEPAAPAQVAPALPPATADDDEAQA
VTAVEIVPPPAPEPAAKKSWIARLRSGLSKTSSSLTSVFVSTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVKAE
RLTDPQQVKAALRGLLIALLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQ
LAIWGERNNVTVVQQESGDPAAVIFDAVGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVID
ANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTDALLG
MFSFFKRLIGSKADGAPTDDPDAPTDRQDNAEAPAAEAARPVERVTAPAPAPAVPVEPAAPAQVAPALPPATADDDEAQA
VTAVEIVPPPAPEPAAKKSWIARLRSGLSKTSSSLTSVFVSTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVKAE
RLTDPQQVKAALRGLLIALLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQ
LAIWGERNNVTVVQQESGDPAAVIFDAVGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVID
ANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTDALLG
Nucleotide
Download Length: 1185 bp
>NTDB_id=989671 BCC1697_RS16860 WP_123036054.1 3724500..3725684(+) (pilA) [Burkholderia gladioli strain BCC1697]
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGGCGCGCCGACCGACGACCCGGACGCGCCGACGGACCG
GCAGGACAACGCCGAGGCCCCCGCGGCCGAAGCGGCCCGGCCCGTCGAGCGGGTCACCGCGCCTGCCCCGGCCCCGGCGG
TTCCGGTCGAGCCGGCCGCGCCCGCGCAAGTCGCCCCTGCTCTCCCCCCCGCCACCGCGGACGACGACGAAGCGCAGGCC
GTCACGGCCGTCGAGATCGTGCCGCCGCCCGCGCCGGAGCCGGCCGCCAAGAAATCCTGGATCGCTCGCCTGCGCTCGGG
CCTGTCGAAGACCAGTTCCAGCCTGACGAGCGTCTTCGTCAGCACCAAGATCGACGAGGATCTCTACGAAGAGCTCGAGA
CCGCACTGCTGATGTCCGACGCCGGCGTCGACGCCACCGAGTACCTGCTCGGCGCGCTGCGCGAGAAGGTCAAGGCCGAG
CGGCTGACCGATCCGCAGCAGGTCAAGGCGGCCCTGCGCGGCCTGCTGATCGCGCTGCTCGCGCCGCTCGAGAAGTCGCT
GATGCTGGGCCGCGCGCAGCCGCTGGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCAGCATCGGCAAGC
TGGCCAAGCACCTGCAGAGCTTCGACCAGTCGGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAG
CTCGCGATCTGGGGCGAGCGCAACAACGTGACGGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGC
GGTGGGCGCGGCGCGCGCGCGCAAGATCAACGTGGTGATGGCCGATACGGCGGGCCGCCTGCCCACCCAGCTGCACCTGA
TGGAGGAGCTGCGCAAGGTCAAGCGCGTGATCGGCAAGGCACAGGCCGACGCGCCGCACGAGGTGCTGCTGGTGATCGAC
GCCAACACCGGCCAGAACGCGCTCGCCCAGGTGAAGGCCTTCGACGACGCGCTAGGCCTCACCGGCCTGATCGTCACCAA
GCTAGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCGCGGCAGCGGCCGGTGCCGGTCTACTTCATCGGCGTCG
GCGAGAAGGTGGAGGACCTGCAGCCCTTCAATGCCGAGGAGTTCACCGACGCGCTGCTGGGCTGA
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGGCGCGCCGACCGACGACCCGGACGCGCCGACGGACCG
GCAGGACAACGCCGAGGCCCCCGCGGCCGAAGCGGCCCGGCCCGTCGAGCGGGTCACCGCGCCTGCCCCGGCCCCGGCGG
TTCCGGTCGAGCCGGCCGCGCCCGCGCAAGTCGCCCCTGCTCTCCCCCCCGCCACCGCGGACGACGACGAAGCGCAGGCC
GTCACGGCCGTCGAGATCGTGCCGCCGCCCGCGCCGGAGCCGGCCGCCAAGAAATCCTGGATCGCTCGCCTGCGCTCGGG
CCTGTCGAAGACCAGTTCCAGCCTGACGAGCGTCTTCGTCAGCACCAAGATCGACGAGGATCTCTACGAAGAGCTCGAGA
CCGCACTGCTGATGTCCGACGCCGGCGTCGACGCCACCGAGTACCTGCTCGGCGCGCTGCGCGAGAAGGTCAAGGCCGAG
CGGCTGACCGATCCGCAGCAGGTCAAGGCGGCCCTGCGCGGCCTGCTGATCGCGCTGCTCGCGCCGCTCGAGAAGTCGCT
GATGCTGGGCCGCGCGCAGCCGCTGGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCAGCATCGGCAAGC
TGGCCAAGCACCTGCAGAGCTTCGACCAGTCGGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAG
CTCGCGATCTGGGGCGAGCGCAACAACGTGACGGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGC
GGTGGGCGCGGCGCGCGCGCGCAAGATCAACGTGGTGATGGCCGATACGGCGGGCCGCCTGCCCACCCAGCTGCACCTGA
TGGAGGAGCTGCGCAAGGTCAAGCGCGTGATCGGCAAGGCACAGGCCGACGCGCCGCACGAGGTGCTGCTGGTGATCGAC
GCCAACACCGGCCAGAACGCGCTCGCCCAGGTGAAGGCCTTCGACGACGCGCTAGGCCTCACCGGCCTGATCGTCACCAA
GCTAGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCGCGGCAGCGGCCGGTGCCGGTCTACTTCATCGGCGTCG
GCGAGAAGGTGGAGGACCTGCAGCCCTTCAATGCCGAGGAGTTCACCGACGCGCTGCTGGGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
63.576 |
76.65 |
0.487 |