Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BCC1697_RS16765 Genome accession   NZ_CP152482
Coordinates   3707774..3709279 (+) Length   501 a.a.
NCBI ID   WP_186052899.1    Uniprot ID   -
Organism   Burkholderia gladioli strain BCC1697     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3702774..3714279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCC1697_RS16740 (BCC1697_003214) kdsD 3703995..3704978 (+) 984 WP_025096995.1 arabinose 5-phosphate isomerase KdsD -
  BCC1697_RS16745 (BCC1697_003215) - 3704978..3705517 (+) 540 WP_013699403.1 HAD family hydrolase -
  BCC1697_RS16750 (BCC1697_003216) lptC 3705521..3706135 (+) 615 WP_017918294.1 LPS export ABC transporter periplasmic protein LptC -
  BCC1697_RS16755 (BCC1697_003217) lptA 3706154..3706822 (+) 669 WP_036036195.1 lipopolysaccharide transport periplasmic protein LptA -
  BCC1697_RS16760 (BCC1697_003218) lptB 3706819..3707595 (+) 777 WP_036036197.1 LPS export ABC transporter ATP-binding protein -
  BCC1697_RS16765 (BCC1697_003219) rpoN/rpoN1 3707774..3709279 (+) 1506 WP_186052899.1 RNA polymerase factor sigma-54 Machinery gene
  BCC1697_RS16770 (BCC1697_003220) hpf 3709430..3709795 (+) 366 WP_013699408.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BCC1697_RS16775 (BCC1697_003221) - 3710009..3710521 (+) 513 WP_025097001.1 PTS sugar transporter subunit IIA -
  BCC1697_RS16780 (BCC1697_003222) hprK 3710647..3711615 (+) 969 WP_013699410.1 HPr(Ser) kinase/phosphatase -
  BCC1697_RS16785 (BCC1697_003223) rapZ 3711726..3712619 (+) 894 WP_013699411.1 RNase adapter RapZ -
  BCC1697_RS16790 (BCC1697_003224) - 3712652..3713287 (+) 636 WP_025097002.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 55107.07 Da        Isoelectric Point: 4.9483

>NTDB_id=989670 BCC1697_RS16765 WP_186052899.1 3707774..3709279(+) (rpoN/rpoN1) [Burkholderia gladioli strain BCC1697]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDEWIASPLRVAADGSLIAQSPPSSTPEPMHG
GGSNGSEASSDRAERDDSRNGDDYDYNADSGDSGQWNLDDYGRSSGASDDDDLPPLQVHEASTSLREHLSAQLRVTQASP
RDRALVMFLIESLDDDGYLGAGLDEVLTDLPEELEVDLDELGAALALLHSFDPAGVGARSASECLRLQLLRLDPSPTRTL
SLDIVSQHLELLAARDFTRLRKQLKANDDELREAHALIRSLEPFPGAAYGKTEADYVVPDIMVRKSGQNWLAELNPEVVP
KLRINHLYANILRNSRGDPGAGSLKQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDQKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=989670 BCC1697_RS16765 WP_186052899.1 3707774..3709279(+) (rpoN/rpoN1) [Burkholderia gladioli strain BCC1697]
ATGAAAGCCAGCCTCCAACTTCGCCTGTCGCAGCACCTCGCGCTCACGCCCCAGCTCCAGCAGTCGATCCGGCTGCTGCA
GCTGTCGACGCTCGAACTGCAGCAGGAAGTCGCGATGGCCGTCGCCCAGAATCCGCTGCTCGAGAACGATGAATGGATCG
CGAGCCCGCTGCGGGTGGCCGCCGACGGCTCGCTGATCGCACAGAGCCCGCCCTCCTCGACGCCCGAGCCGATGCACGGC
GGCGGCTCGAACGGCAGCGAAGCCTCGAGCGATCGCGCCGAACGCGACGACTCGCGCAATGGCGACGACTACGACTACAA
CGCCGACAGCGGCGATTCAGGTCAGTGGAATCTCGACGACTACGGTCGATCCTCGGGCGCCTCCGACGACGACGATCTCC
CGCCGCTGCAGGTGCACGAGGCCTCGACCTCGCTGCGCGAGCATCTGTCCGCGCAATTGCGCGTGACCCAGGCCAGCCCG
CGCGACCGTGCGCTGGTGATGTTCCTGATCGAATCGCTCGACGACGACGGTTATCTCGGCGCGGGGCTCGACGAGGTGTT
GACCGACCTGCCCGAGGAACTGGAGGTCGATCTCGACGAACTGGGCGCCGCGCTGGCGCTGCTGCACAGCTTCGACCCGG
CCGGCGTGGGGGCGCGCTCCGCATCCGAATGCCTGCGCCTGCAATTGTTGCGACTCGATCCGTCCCCCACGCGCACGCTG
TCGCTCGACATCGTCTCGCAGCATCTCGAACTGCTGGCCGCGCGCGACTTCACGCGGCTGCGCAAGCAGTTGAAGGCCAA
CGACGACGAGCTGCGCGAGGCCCATGCACTGATCCGCTCGCTCGAGCCCTTCCCGGGCGCCGCCTACGGCAAGACCGAGG
CGGACTACGTGGTGCCCGACATCATGGTCAGGAAGAGCGGCCAGAACTGGCTCGCGGAGCTCAATCCCGAGGTGGTGCCG
AAGCTGCGCATCAACCACCTGTACGCCAATATCCTGCGCAACAGCCGGGGCGATCCGGGCGCCGGTTCGCTCAAGCAGCA
GCTCCAGGAAGCGCGCTGGCTGATCAAGAATATCCAGCAGCGATTCGAGACCATCCTGCGTGTCGCGCAGGCCATCGTGG
AGCGTCAGAAGAACTTTTTTGCGCATGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCTCCCGTGTGACGACCGGCAAGTACATGCTGACCCCGTTCGGCACTCTTGAATTTAAGTACTT
CTTCGGATCGCACGTGTCGACGGATACCGGGGGCGCTGCCTCTTCCACGGCAATCCGCGCCCTCATCAAGCAACTGATAG
GAGCCGAAGACCAGAAATCTCCTCTTTCGGACAGCCGAATAGCCGAGCTGCTGGCGGAACAAGGCTTCGTGGTCGCGCGC
CGCACCGTTGCGAAGTATCGCGAAGCCCTCAAGATCCCCGCGGTGAATCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.577

100

0.693

Multiple sequence alignment