Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BCC0238_RS17065 | Genome accession | NZ_CP152478 |
| Coordinates | 3810677..3811858 (+) | Length | 393 a.a. |
| NCBI ID | WP_098181562.1 | Uniprot ID | - |
| Organism | Burkholderia gladioli strain BCC0238 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3805677..3816858
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCC0238_RS17035 (BCC0238_003290) | - | 3806295..3806909 (+) | 615 | WP_013699419.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| BCC0238_RS17040 (BCC0238_003291) | pth | 3807006..3807611 (+) | 606 | WP_025097010.1 | aminoacyl-tRNA hydrolase | - |
| BCC0238_RS17045 (BCC0238_003292) | hisC | 3807707..3808774 (+) | 1068 | WP_105852906.1 | histidinol-phosphate transaminase | - |
| BCC0238_RS17050 (BCC0238_003293) | - | 3808921..3809193 (-) | 273 | WP_013699422.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| BCC0238_RS17055 (BCC0238_003294) | coaD | 3809260..3809760 (-) | 501 | WP_013699423.1 | pantetheine-phosphate adenylyltransferase | - |
| BCC0238_RS17060 (BCC0238_003295) | rsmD | 3809872..3810486 (-) | 615 | WP_036036218.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| BCC0238_RS17065 (BCC0238_003296) | pilA | 3810677..3811858 (+) | 1182 | WP_098181562.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| BCC0238_RS17070 (BCC0238_003297) | maiA | 3811931..3812575 (-) | 645 | WP_046579733.1 | maleylacetoacetate isomerase | - |
| BCC0238_RS17075 (BCC0238_003298) | ybiB | 3812789..3813769 (+) | 981 | WP_126242737.1 | DNA-binding protein YbiB | - |
| BCC0238_RS17080 (BCC0238_003299) | leuA | 3814269..3815921 (+) | 1653 | WP_025097017.1 | 2-isopropylmalate synthase | - |
| BCC0238_RS17085 (BCC0238_003300) | - | 3816103..3816489 (-) | 387 | WP_013699429.1 | nuclear transport factor 2 family protein | - |
Sequence
Protein
Download Length: 393 a.a. Molecular weight: 41410.47 Da Isoelectric Point: 4.8819
>NTDB_id=989659 BCC0238_RS17065 WP_098181562.1 3810677..3811858(+) (pilA) [Burkholderia gladioli strain BCC0238]
MFSFFKRLIGSKADGAPTDDQDAPTDRQDDAEAPAAEAPRPVERVAAPTPAPAVPVEPAAPAQVAPALPAAAHEDEAQAV
TAVEIVPPPAPEPAAKKSWIARLRSGLSKTSSSLTSVFVSTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVKAER
LTDPQQVKAALRGLLIALLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQL
AIWGERNNVTVVQQESGDPAAVIFDAVGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVIDA
NTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTDALLG
MFSFFKRLIGSKADGAPTDDQDAPTDRQDDAEAPAAEAPRPVERVAAPTPAPAVPVEPAAPAQVAPALPAAAHEDEAQAV
TAVEIVPPPAPEPAAKKSWIARLRSGLSKTSSSLTSVFVSTKIDEDLYEELETALLMSDAGVDATEYLLGALREKVKAER
LTDPQQVKAALRGLLIALLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQL
AIWGERNNVTVVQQESGDPAAVIFDAVGAARARKINVVMADTAGRLPTQLHLMEELRKVKRVIGKAQADAPHEVLLVIDA
NTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFTDALLG
Nucleotide
Download Length: 1182 bp
>NTDB_id=989659 BCC0238_RS17065 WP_098181562.1 3810677..3811858(+) (pilA) [Burkholderia gladioli strain BCC0238]
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGGCGCGCCGACCGACGACCAGGACGCGCCGACGGACCG
GCAGGACGACGCCGAGGCGCCCGCGGCCGAAGCGCCCCGGCCCGTCGAGCGGGTCGCCGCGCCGACGCCGGCGCCGGCGG
TTCCGGTCGAGCCGGCCGCGCCCGCGCAAGTCGCCCCTGCTCTCCCCGCCGCCGCGCACGAAGACGAAGCGCAGGCCGTC
ACGGCCGTCGAGATCGTGCCGCCGCCCGCGCCGGAGCCGGCCGCCAAGAAATCCTGGATCGCGCGCCTGCGCTCGGGCCT
GTCGAAGACCAGTTCGAGCCTGACCAGCGTGTTCGTCAGCACCAAGATCGACGAGGATCTCTACGAGGAGCTCGAGACCG
CGCTGCTGATGTCCGACGCCGGCGTCGACGCCACCGAGTACCTGCTCGGCGCGCTGCGCGAGAAGGTCAAGGCCGAGCGG
CTGACCGATCCGCAGCAGGTCAAGGCGGCCCTGCGCGGCCTGCTGATCGCGCTGCTCGCGCCGCTCGAGAAGTCGCTGAT
GCTGGGCCGCGCGCAGCCGCTGGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCAGCATCGGCAAGCTGG
CCAAGCACCTGCAGAGCTTCGACCAGTCGGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTC
GCGATCTGGGGCGAGCGCAACAACGTGACGGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGT
GGGCGCCGCGCGCGCGCGCAAGATCAACGTGGTGATGGCCGATACGGCGGGCCGCCTGCCCACCCAGCTTCACCTGATGG
AGGAGCTGCGCAAGGTCAAGCGCGTGATCGGCAAGGCACAGGCCGACGCGCCGCACGAGGTGCTGCTGGTGATCGACGCC
AACACCGGCCAGAACGCGCTCGCCCAGGTAAAGGCCTTCGACGACGCGCTGGGCCTCACCGGCCTGATCGTCACCAAGCT
CGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCGCGGCAGCGGCCGGTGCCGGTCTACTTCATCGGCGTCGGCG
AGAAGGTGGAGGACCTGCAGCCCTTCAATGCCGAGGAGTTCACCGACGCGCTGCTGGGCTGA
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGGCGCGCCGACCGACGACCAGGACGCGCCGACGGACCG
GCAGGACGACGCCGAGGCGCCCGCGGCCGAAGCGCCCCGGCCCGTCGAGCGGGTCGCCGCGCCGACGCCGGCGCCGGCGG
TTCCGGTCGAGCCGGCCGCGCCCGCGCAAGTCGCCCCTGCTCTCCCCGCCGCCGCGCACGAAGACGAAGCGCAGGCCGTC
ACGGCCGTCGAGATCGTGCCGCCGCCCGCGCCGGAGCCGGCCGCCAAGAAATCCTGGATCGCGCGCCTGCGCTCGGGCCT
GTCGAAGACCAGTTCGAGCCTGACCAGCGTGTTCGTCAGCACCAAGATCGACGAGGATCTCTACGAGGAGCTCGAGACCG
CGCTGCTGATGTCCGACGCCGGCGTCGACGCCACCGAGTACCTGCTCGGCGCGCTGCGCGAGAAGGTCAAGGCCGAGCGG
CTGACCGATCCGCAGCAGGTCAAGGCGGCCCTGCGCGGCCTGCTGATCGCGCTGCTCGCGCCGCTCGAGAAGTCGCTGAT
GCTGGGCCGCGCGCAGCCGCTGGTGATGATGATCGCGGGCGTCAACGGCGCCGGCAAGACCACCAGCATCGGCAAGCTGG
CCAAGCACCTGCAGAGCTTCGACCAGTCGGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTC
GCGATCTGGGGCGAGCGCAACAACGTGACGGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCGGTGATCTTCGACGCGGT
GGGCGCCGCGCGCGCGCGCAAGATCAACGTGGTGATGGCCGATACGGCGGGCCGCCTGCCCACCCAGCTTCACCTGATGG
AGGAGCTGCGCAAGGTCAAGCGCGTGATCGGCAAGGCACAGGCCGACGCGCCGCACGAGGTGCTGCTGGTGATCGACGCC
AACACCGGCCAGAACGCGCTCGCCCAGGTAAAGGCCTTCGACGACGCGCTGGGCCTCACCGGCCTGATCGTCACCAAGCT
CGACGGCACCGCGAAGGGCGGCATCCTCGCCGCGATCGCGCGGCAGCGGCCGGTGCCGGTCTACTTCATCGGCGTCGGCG
AGAAGGTGGAGGACCTGCAGCCCTTCAATGCCGAGGAGTTCACCGACGCGCTGCTGGGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
51.306 |
100 |
0.55 |