Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHI06_RS27630 Genome accession   NZ_CP152477
Coordinates   6080097..6081593 (+) Length   498 a.a.
NCBI ID   WP_347169893.1    Uniprot ID   -
Organism   Pseudomonas salmasensis strain POE54     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 6078168..6079521 6080097..6081593 flank 576


Gene organization within MGE regions


Location: 6078168..6081593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHI06_RS27625 (AAHI06_27625) - 6078168..6079470 (-) 1303 Protein_5433 IS4 family transposase -
  AAHI06_RS27630 (AAHI06_27630) comM 6080097..6081593 (+) 1497 WP_347169893.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53449.74 Da        Isoelectric Point: 8.2581

>NTDB_id=989647 AAHI06_RS27630 WP_347169893.1 6080097..6081593(+) (comM) [Pseudomonas salmasensis strain POE54]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYRSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPNRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALSPTQQA
GDTTADASVRVAQARERQQQRQGCANAFLDLPGLRQHCKLPKVDEGWLETACERLTLSLRAAHRLLKVARTLADLDQMDA
ITRDHLKEALQYRPASIS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=989647 AAHI06_RS27630 WP_347169893.1 6080097..6081593(+) (comM) [Pseudomonas salmasensis strain POE54]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGTGTAGAAGCCCCCGCCGTCACCGTCGAAGTGCATATGGCCAA
TGGCCTGCCATCTCTCACCCTGGTGGGTTTGCCTGAGACCGCAGTGAAGGAAAGCAAAGACCGCGTGCGCAGTGCCATCC
TCAACTCGGCGCTGCAATATCCGGCCCGCCGCATCACGCTCAATCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATCTGGCGATTGCCCTAGGCATCCTGGCGGCCAGTGTGCAGGTGCCGGCCTTGATGCTCGATGACGTGGAATGCCT
TGGGGAATTGGCACTGTCCGGCGAGGTGCGCGCGGTGAAGGGCGTGTTGCCGGCCGCGCTGGCGGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCCCGTGCCAATGCCGAGGAGGCGTGCCTGGCGTCAGGGTTGAAGGTGATTGCGGTGGATCACTTG
CTGCAAGTGGTGGCGCACTTGAATGGGCATGTGCCGATTGAGCCCTACAGGTCCGACGGCTTGCTGTACTTGAACAAGCC
TTACCCGGACCTGAGTGAAGTACAGGGCCAACTCGCGGCCAAGCGCGCATTGCTGATCGCGGCGGCGGGCGCGCATAACC
TGTTGTTCAGCGGGCCACCAGGCACCGGCAAGACGTTATTGGCCAGCCGGCTGCCGGGTTTGCTGCCGCCATTGAGCGAG
CAGGAAGCACTGGAAGTGGCCGCTATCCAATCCGTGGTCAGCCTGGCCCCTCTGAGTCATTGGCCTAACCGCCCGTTCCG
TCAGCCACACCACTCGGCATCCGGGCCGGCGCTGGTGGGTGGCGGCTCGAAGCCACAACCGGGGGAAATCACCCTGGCCC
ATCACGGGGTGTTGTTCCTGGATGAGCTGCCAGAGTTCGATCGCAAGGTGCTGGAGGTGCTGCGTGAACCATTGGAGTCG
GGGCACATCGTGATCTCCCGCGCCCGTGACCGCGTGAGTTTCCCGGCGCGCTTTCAGCTGGTCGCGGCGATGAACCCCTG
CCCTTGCGGCTACATGGGCGAACCCAGCGGGCGTTGCCGGTGTACGCCGGAGCAGATCCAGCGCTATCGCAACAAGCTAT
CCGGCCCTTTGCTGGACCGGATTGATTTGCACCTGACCGTCGCGCGGGAGGCCACTGCTCTGAGCCCCACTCAACAGGCG
GGCGATACAACAGCCGATGCCTCGGTGCGGGTAGCGCAAGCACGCGAGCGCCAACAGCAACGCCAGGGGTGTGCCAATGC
TTTTCTGGACCTGCCGGGGCTGCGCCAGCACTGCAAGCTGCCAAAGGTCGACGAGGGTTGGCTGGAGACCGCCTGCGAGC
GACTGACCCTGTCATTGCGGGCGGCCCACCGGCTGCTGAAGGTGGCGCGCACCTTGGCGGACCTGGACCAGATGGACGCC
ATCACCCGCGACCATCTGAAGGAGGCCCTGCAATATCGGCCCGCATCCATCTCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.566

99.398

0.562
  comM Glaesserella parasuis strain SC1401

55.888

100

0.562
  comM Vibrio cholerae strain A1552

55.96

99.398

0.556
  comM Haemophilus influenzae Rd KW20

55

100

0.552
  comM Legionella pneumophila str. Paris

50.605

99.598

0.504
  comM Legionella pneumophila strain ERS1305867

50.605

99.598

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.464

Multiple sequence alignment