Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OO845_RS05450 Genome accession   NZ_AP026937
Coordinates   1097112..1097741 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC20-4B-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092112..1102741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO845_RS05435 (EC204B2_10280) helD 1092354..1094408 (-) 2055 WP_001315388.1 DNA helicase IV -
  OO845_RS05440 (EC204B2_10290) yccF 1094531..1094977 (+) 447 WP_001261235.1 YccF domain-containing protein -
  OO845_RS05445 (EC204B2_10300) yccS 1094987..1097149 (+) 2163 WP_000875044.1 YccS family putative transporter -
  OO845_RS05450 (EC204B2_10310) sxy/tfoX 1097112..1097741 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  OO845_RS05455 (EC204B2_10320) sulA 1097960..1098469 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  OO845_RS05460 (EC204B2_10340) ompA 1098826..1099878 (+) 1053 WP_000750419.1 porin OmpA -
  OO845_RS05465 (EC204B2_10350) matP 1099953..1100405 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  OO845_RS05470 (EC204B2_10360) ycbZ 1100591..1102351 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=98963 OO845_RS05450 WP_000839153.1 1097112..1097741(-) (sxy/tfoX) [Escherichia coli strain EC20-4B-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=98963 OO845_RS05450 WP_000839153.1 1097112..1097741(-) (sxy/tfoX) [Escherichia coli strain EC20-4B-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAGGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment