Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAHI02_RS12500 Genome accession   NZ_CP152475
Coordinates   2648494..2649603 (+) Length   369 a.a.
NCBI ID   WP_346983521.1    Uniprot ID   -
Organism   Chryseobacterium sp. POE27     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2643494..2654603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHI02_RS12480 (AAHI02_12475) sufC 2643926..2644670 (+) 745 Protein_2447 Fe-S cluster assembly ATPase SufC -
  AAHI02_RS12485 (AAHI02_12480) sufD 2644774..2646083 (+) 1310 Protein_2448 Fe-S cluster assembly protein SufD -
  AAHI02_RS12490 (AAHI02_12485) - 2646466..2647392 (-) 927 WP_346983520.1 DUF3078 domain-containing protein -
  AAHI02_RS12495 (AAHI02_12490) - 2647711..2648458 (+) 748 Protein_2450 rhomboid family intramembrane serine protease -
  AAHI02_RS12500 (AAHI02_12495) dprA 2648494..2649603 (+) 1110 WP_346983521.1 DNA-processing protein DprA Machinery gene
  AAHI02_RS12505 (AAHI02_12500) gdhA 2649794..2651152 (+) 1359 WP_346983522.1 NADP-specific glutamate dehydrogenase -
  AAHI02_RS12510 (AAHI02_12505) - 2651541..2652500 (+) 960 WP_346983523.1 IS110 family transposase -
  AAHI02_RS12515 (AAHI02_12510) - 2653351..2654085 (-) 735 WP_346983524.1 DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41585.39 Da        Isoelectric Point: 7.0089

>NTDB_id=989618 AAHI02_RS12500 WP_346983521.1 2648494..2649603(+) (dprA) [Chryseobacterium sp. POE27]
MYSEEHLYSIALRECNLIGDINFYKLVRIFGSAKNAWQNTRKEYKKIDGLGYKIVSDIGNPEHLKFAENELSFCEKNNIQ
INLRHLGELPQLLNECYDAPVILYQKGNFDDTKQKISIVGTRNMTSYGSQFLHSFFEETQSCNFISVSGLALGIDKEVHE
QSLQNNISTAAVLAHGFHTMYPSKNRKLSEKIIEEGGALFTEFNSSRKPDRENFIQRNRIVAGISPATIVVETAFGGGSI
STATFANQYNREVFALPGKITEKQSQGCNHLIFQNKAAAISTVKDLIDNLGIKKPKEKIEELFSHSEINIQFTESQQLIF
NIISGNPKISLDDIIERTELSSHKILPIILELELLGRVKSLSGRQFLAM

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=989618 AAHI02_RS12500 WP_346983521.1 2648494..2649603(+) (dprA) [Chryseobacterium sp. POE27]
ATGTATTCTGAAGAACATCTTTATTCCATTGCCCTACGCGAATGCAACTTAATCGGCGACATCAACTTCTACAAGCTTGT
ACGAATTTTCGGAAGTGCAAAAAATGCCTGGCAAAATACCAGAAAAGAATATAAAAAGATTGACGGGCTGGGCTACAAAA
TTGTTTCAGATATCGGAAATCCCGAACACCTTAAATTTGCTGAAAATGAGCTTTCATTCTGTGAAAAGAATAATATCCAG
ATCAATTTGAGACATCTTGGAGAGCTTCCCCAGCTGTTAAATGAATGCTATGATGCTCCGGTCATATTGTATCAGAAGGG
AAACTTTGATGATACAAAACAAAAAATAAGCATTGTAGGAACGAGAAATATGACTTCTTATGGCAGCCAGTTTCTTCATT
CTTTTTTTGAAGAAACACAATCCTGCAATTTCATTTCAGTCAGCGGCCTTGCATTAGGTATCGATAAAGAAGTTCACGAA
CAATCTCTACAGAACAATATTTCCACGGCGGCTGTATTAGCACACGGCTTTCATACCATGTATCCTTCAAAAAACCGCAA
ACTTTCTGAAAAGATTATAGAAGAAGGCGGGGCATTATTCACAGAATTTAATTCTTCACGAAAACCTGACCGGGAAAATT
TCATTCAACGAAACCGGATCGTAGCCGGTATTTCTCCTGCGACAATTGTTGTTGAAACAGCTTTCGGAGGCGGATCGATA
AGTACGGCAACTTTTGCCAATCAGTATAATCGTGAAGTATTTGCGCTTCCCGGAAAAATTACCGAAAAGCAAAGTCAGGG
CTGCAATCATCTCATATTTCAGAATAAGGCGGCAGCAATTTCTACGGTGAAAGATCTCATTGATAATTTGGGAATTAAAA
AGCCTAAAGAAAAAATAGAAGAATTGTTTTCCCACAGTGAAATTAATATTCAATTCACTGAATCACAACAATTAATATTC
AATATTATTTCAGGTAATCCGAAGATTTCTCTGGATGATATCATAGAAAGAACAGAGCTTTCGTCCCACAAAATTTTACC
CATAATTCTGGAATTGGAACTTTTGGGGAGAGTAAAATCACTTTCAGGGAGACAATTTTTAGCAATGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)

DprA winged helix domain (DprA_WH)

(313-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.67

98.645

0.539

Multiple sequence alignment