Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAHI02_RS10255 Genome accession   NZ_CP152475
Coordinates   2176500..2177852 (+) Length   450 a.a.
NCBI ID   WP_346986560.1    Uniprot ID   -
Organism   Chryseobacterium sp. POE27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2171500..2182852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHI02_RS10240 (AAHI02_10235) yidC 2171931..2173730 (-) 1800 WP_346986557.1 membrane protein insertase YidC -
  AAHI02_RS10245 (AAHI02_10240) - 2173903..2175516 (-) 1614 WP_346986558.1 CTP synthase -
  AAHI02_RS10250 (AAHI02_10245) - 2175748..2176317 (-) 570 WP_346986559.1 YceI family protein -
  AAHI02_RS10255 (AAHI02_10250) radA 2176500..2177852 (+) 1353 WP_346986560.1 DNA repair protein RadA Machinery gene
  AAHI02_RS10260 (AAHI02_10255) - 2177959..2178462 (+) 504 WP_346986561.1 ACP phosphodiesterase -
  AAHI02_RS10265 (AAHI02_10260) - 2178550..2179491 (-) 942 WP_346986562.1 phosphatase PAP2 family protein -
  AAHI02_RS10270 (AAHI02_10265) - 2179585..2179749 (-) 165 WP_346986563.1 DUF6702 family protein -
  AAHI02_RS10275 (AAHI02_10270) - 2179688..2179969 (-) 282 WP_346986564.1 DUF6702 family protein -
  AAHI02_RS10280 (AAHI02_10275) - 2179938..2180087 (-) 150 WP_346986565.1 DUF6702 family protein -
  AAHI02_RS10285 (AAHI02_10280) - 2180127..2180387 (-) 261 WP_346986566.1 hypothetical protein -
  AAHI02_RS10290 (AAHI02_10285) - 2180363..2180614 (-) 252 WP_346986567.1 hypothetical protein -
  AAHI02_RS10295 (AAHI02_10290) - 2180681..2181259 (+) 579 WP_346986568.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49940.54 Da        Isoelectric Point: 6.6946

>NTDB_id=989615 AAHI02_RS10255 WP_346986560.1 2176500..2177852(+) (radA) [Chryseobacterium sp. POE27]
MAKLKTAYFCQNCGAQYSQWMGQCKNCGQWNTLVEEIVEKTSSHKTPPFSKSKQNVINIIEVETSEEPRIKTPSEELNRV
LGGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTDIHNPNCFLFTETNLEKILHEAKK
LEPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRN
HLFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQR
SSTGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHYCFAGEIGLSGEIRP
IAQAEQRITEAEKLGYEKIFISNLNKLPKKKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=989615 AAHI02_RS10255 WP_346986560.1 2176500..2177852(+) (radA) [Chryseobacterium sp. POE27]
ATGGCAAAACTAAAAACAGCATATTTCTGTCAAAACTGTGGTGCACAATATTCCCAATGGATGGGACAATGCAAAAACTG
CGGACAATGGAATACTTTGGTGGAGGAAATTGTAGAAAAAACCTCATCACACAAAACTCCCCCTTTTTCAAAATCAAAAC
AAAACGTTATCAATATCATAGAGGTTGAAACCAGCGAAGAGCCGAGAATAAAAACACCTTCCGAAGAACTCAACCGTGTT
CTGGGTGGCGGAATTGTCTTAGGCTCCGTAACCTTGATCGGTGGCGAACCCGGAATCGGTAAATCTACTCTTCTGCTTCA
GCTGGCTTTAAAAATGAAGAAGAAAATACTCTACGTCTCAGGTGAGGAAAGTGCGTCTCAAATTAAAATGAGAGCCGACC
GGCTTACGGATATTCATAATCCGAACTGCTTCCTTTTTACAGAAACGAATCTTGAAAAGATTCTTCACGAAGCCAAAAAA
CTGGAACCGGATTTTGTTATTATCGATTCTATTCAGACGCTACAGTCTCAGTTGATTGAAAGTTCACCGGGAACGGTTTC
TCAAATAAGAGAATGTTCAAACGAGATTATAAAATACGCTAAAGAAAATAATGTTCCTGTTTTTTTAGTTGGCCATATCA
CTAAAGACGGGCAAATTGCCGGTCCGAAAGTGCTGGAACACATGGTTGATGTCGTGTTAAATTTTGACGGAGACAGAAAT
CATCTTTTCAGATTGTTAAGAGCTAATAAAAACCGTTTCGGATCAACTTCCGAAATTGGAATCTATGAAATGATTTCACA
GGGACTAAAAGAAATTAAAAATCCTTCCGAAATTTTAATTACCAAAAAATTTGAAGAGCTTTCCGGAAATTCGGTAGCCG
TTACATTAGAAGGAAACCGGCCAATGCTGCTGGAAATTCAGGCATTAGTAAGTACGGCAGTTTATGGGACACCGCAAAGA
AGCTCCACCGGTTTTGATGCCAAAAGATTAAATATGCTTCTCGCCGTTCTTGAAAAAAGAGCGGGATTCCAGCTCGGCGC
CAAAGACGTTTTCCTCAATATTACAGGAGGAATAAAAACGGATGATCCGGCTTTGGATCTGGCGGTTGTCGCTTCCATTC
TGTCATCAAATGAAGATATTGCCATCTCTGAACATTACTGTTTTGCAGGAGAAATAGGGTTAAGCGGAGAAATACGACCA
ATTGCTCAGGCTGAACAACGTATTACTGAAGCAGAAAAACTTGGTTATGAGAAGATTTTTATATCAAATTTAAATAAGCT
CCCAAAGAAAAAATTCGGAATAAAAATAGAAGAAGTAAGTAAAATTGAAGATTTCCATGAAAGATTGTTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(339-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.779

100

0.5
  radA Streptococcus mitis NCTC 12261

47.807

100

0.484
  radA Streptococcus pneumoniae D39

47.588

100

0.482
  radA Streptococcus pneumoniae TIGR4

47.588

100

0.482
  radA Streptococcus pneumoniae R6

47.588

100

0.482
  radA Streptococcus pneumoniae Rx1

47.588

100

0.482
  radA Streptococcus mitis SK321

49.645

94

0.467

Multiple sequence alignment