Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAHI02_RS09535 Genome accession   NZ_CP152475
Coordinates   2015510..2016163 (+) Length   217 a.a.
NCBI ID   WP_346986443.1    Uniprot ID   -
Organism   Chryseobacterium sp. POE27     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2010510..2021163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHI02_RS09495 (AAHI02_09490) - 2010560..2011105 (-) 546 WP_346986435.1 hypothetical protein -
  AAHI02_RS09500 (AAHI02_09495) - 2011229..2012215 (-) 987 WP_346986436.1 acyl transferase -
  AAHI02_RS09505 (AAHI02_09500) - 2012389..2013180 (-) 792 WP_346986437.1 UDP-2,3-diacylglucosamine diphosphatase -
  AAHI02_RS09510 (AAHI02_09505) - 2013206..2013652 (-) 447 WP_346986438.1 6-carboxytetrahydropterin synthase -
  AAHI02_RS09515 (AAHI02_09510) - 2013748..2013978 (+) 231 WP_346986439.1 addiction module protein -
  AAHI02_RS09520 (AAHI02_09515) - 2013968..2014264 (+) 297 WP_346986440.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AAHI02_RS09525 (AAHI02_09520) - 2014277..2014783 (+) 507 WP_346986441.1 TlpA disulfide reductase family protein -
  AAHI02_RS09530 (AAHI02_09525) - 2014784..2015167 (-) 384 WP_346986442.1 thioesterase family protein -
  AAHI02_RS09535 (AAHI02_09530) comF 2015510..2016163 (+) 654 WP_346986443.1 ComF family protein Machinery gene
  AAHI02_RS09540 (AAHI02_09535) upp 2016227..2016880 (-) 654 WP_346986444.1 uracil phosphoribosyltransferase -
  AAHI02_RS09545 (AAHI02_09540) der 2016961..2018271 (-) 1311 WP_346986445.1 ribosome biogenesis GTPase Der -
  AAHI02_RS09555 (AAHI02_09550) - 2018951..2019835 (-) 885 WP_346986446.1 DUF2931 family protein -
  AAHI02_RS09560 (AAHI02_09555) - 2019919..2020998 (-) 1080 WP_346986447.1 DUF2931 family protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25567.57 Da        Isoelectric Point: 7.2592

>NTDB_id=989613 AAHI02_RS09535 WP_346986443.1 2015510..2016163(+) (comF) [Chryseobacterium sp. POE27]
MILDIFFPNRCLGCNRIIDADLLVCELCFEHIDFAHFNYFDDNFIKEKCRLLFPVEHTFALMQFEQENLSRKIIHELKYK
SREKAGKVLAQWTSERLNFKDKRPDLLVSVPLHPRKLKERGYNQLHIFTEKLSEFYDIPFDHHLIRRNHYSKAQALKDKE
HRLETENTFSITKEISGKHILLVDDVFTTGNTLATIAWEILKAGNNTVSILVMAVDM

Nucleotide


Download         Length: 654 bp        

>NTDB_id=989613 AAHI02_RS09535 WP_346986443.1 2015510..2016163(+) (comF) [Chryseobacterium sp. POE27]
ATGATTTTAGATATTTTCTTTCCGAACCGCTGCCTTGGCTGCAACCGCATTATTGATGCCGATCTTCTGGTCTGTGAGCT
TTGTTTCGAGCATATCGATTTTGCCCATTTCAATTATTTTGACGATAATTTTATTAAAGAAAAATGCAGACTACTCTTTC
CGGTTGAGCATACTTTTGCGCTGATGCAATTTGAACAAGAAAACCTCAGCAGAAAGATCATCCATGAATTAAAATACAAA
AGTAGGGAAAAGGCCGGAAAAGTTCTCGCACAATGGACTTCAGAGCGATTGAATTTTAAAGATAAAAGGCCTGATTTACT
TGTTTCAGTGCCGCTTCATCCCAGGAAACTGAAAGAAAGAGGCTACAATCAGCTGCATATTTTTACAGAGAAACTTTCGG
AATTCTACGATATTCCGTTTGACCATCATCTGATCAGAAGAAATCATTATTCAAAAGCTCAGGCACTCAAAGATAAGGAA
CATCGTCTGGAAACTGAAAATACATTTTCGATCACAAAAGAAATCTCCGGAAAACACATCTTACTCGTTGATGATGTTTT
TACCACGGGAAATACTTTAGCAACCATCGCATGGGAAATCCTGAAGGCAGGAAACAATACTGTAAGTATTCTGGTGATGG
CTGTCGATATGTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)

Phosphoribosyl transferase domain (Pribosyltran)

(137-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

50.926

99.539

0.507

Multiple sequence alignment