Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   HMPREF9425_RS03905 Genome accession   NZ_GL831112
Coordinates   793157..795367 (+) Length   736 a.a.
NCBI ID   WP_037621676.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 788157..800367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS03880 (HMPREF9425_0809) hflX 788765..790003 (+) 1239 WP_003096966.1 GTPase HflX -
  HMPREF9425_RS03885 (HMPREF9425_0810) - 789996..790637 (+) 642 WP_003096968.1 hypothetical protein -
  HMPREF9425_RS03890 (HMPREF9425_0811) rnz 790669..791598 (+) 930 WP_003096969.1 ribonuclease Z -
  HMPREF9425_RS03895 (HMPREF9425_0812) - 791598..792365 (+) 768 WP_003092437.1 SDR family NAD(P)-dependent oxidoreductase -
  HMPREF9425_RS03900 (HMPREF9425_0813) - 792442..792846 (+) 405 WP_003092934.1 GNAT family N-acetyltransferase -
  HMPREF9425_RS03905 (HMPREF9425_0814) recJ 793157..795367 (+) 2211 WP_037621676.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  HMPREF9425_RS03910 (HMPREF9425_0815) - 795482..796000 (+) 519 WP_003092661.1 adenine phosphoribosyltransferase -
  HMPREF9425_RS03915 (HMPREF9425_0816) metA 796171..797115 (+) 945 WP_003093071.1 homoserine O-acetyltransferase MetA -
  HMPREF9425_RS03920 (HMPREF9425_0817) - 797186..797884 (+) 699 WP_003092593.1 DnaD domain-containing protein -
  HMPREF9425_RS03925 (HMPREF9425_0818) nth 797884..798528 (+) 645 WP_003092414.1 endonuclease III -
  HMPREF9425_RS10255 (HMPREF9425_0820) - 798875..799411 (+) 537 WP_003092586.1 hypothetical protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 82523.75 Da        Isoelectric Point: 4.3410

>NTDB_id=989511 HMPREF9425_RS03905 WP_037621676.1 793157..795367(+) (recJ) [Streptococcus vestibularis ATCC 49124]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGITTEEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSEILCQYVYDNDIDTSAKNTLHLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNISLPEGLPTVEEAADTEPAVVLNTLPDSATELKAWFEGKAFQAIYFKNNIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDDLSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEESKIFQDLKRLVKFQELMA
LGTPQEIYDWLYKQEQ

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=989511 HMPREF9425_RS03905 WP_037621676.1 793157..795367(+) (recJ) [Streptococcus vestibularis ATCC 49124]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCATTACGACAGAAGAGGCTCTTGAAGACTTTCTAAAGGCTG
ATTTATCACACCTTCATGATCCTTATCTTCTTCATGATATGGATAAGGCAGTGGCTAGAATTCGTCAAGCCATTGAAAAT
TATGAGCAAATCTTAGTCTATGGGGACTATGATGCGGATGGGATGACATCAGCATCGATTGTCAAGGAAGCCCTTGAAAT
GATGGGAGCTGAAGCTCGAGTCTATCTGCCTAACCGTTTTACAGATGGTTATGGACCAAATGAAAGTGTCTATAAGTATT
TCATTGAGCAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGGGTTGCGGGAAATGAAGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGCCGGCACAGCTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGTTGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGATTTGGTAGCCATTGGTACCATTGCTGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTCAAGACTACTGAGCGTATCGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
GGACCCAACAACGATTTCCGAAGAAACGGTAGGATTCAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTTCTGACCGGATTTGACGATGAGGAAGCTCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCCATGACTATGGTGGATTTGGACAAACCTGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGTGTCCTCGGTATTGTGGCGGGGCGCATCATGGAACAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGATCAGCCCGTAGTTTGGAATCTATTAATATCTTCCACGCTCTTGATGAC
CACCGAGATATCTTTACTGCATTTGGAGGACACGCTGGAGCAGCTGGGATGACCCTTCCTGAAGAAAATCTTGGTCAACT
ATCAGAGATCTTGTGTCAGTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGCTTCATTTAGACGAGGAGC
TCCAACTCAGCGAGCTTAGCTTGGATACCATTAAGAGTCTAGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACTGTCACTCAAGCTAGGACAATGGGACAAAATGGAGCCCATCTTAAGTTTAAGGTTAA
GCAAGGTAAGGATAGCTTTGATGTTGTCGCTTTTAATAAAGGGAATCTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGTCAGACAACGCTACAGCTCATGCTAGAAGATGCCCGTGTGGAT
GGTGTTCAATTATTTGATTTCCGCTCAAAAAATATATCACTACCTGAGGGCCTACCAACGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAACACCCTACCGGATTCAGCGACGGAATTAAAAGCGTGGTTTGAAGGTAAAGCTTTCCAGG
CTATCTATTTTAAAAATAATATAAAGGAAGCCTATTATCTGACGGGCTATGGAACTAGAGAACAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTTCCAGAATTTGATGTGCGCTATAAACTAGATGACCTCAGTCATTACCTTAAGATTGATAAAAT
TCTCCTCATCAAGATGATTCAAATCTTTGATGAATTGGACTTTGTCACTATTGATAATGGTGTCATGACAGTTAATAAAG
AGGCTGAAAAACGTGAGATTGAGGAAAGCAAGATTTTCCAGGACCTTAAACGTCTTGTCAAGTTCCAAGAACTCATGGCT
TTGGGAACACCACAGGAAATTTATGATTGGCTCTACAAACAGGAGCAGTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

DHHA1 domain (DHHA1)

(317-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.838

100

0.682
  recJ Bacillus subtilis subsp. subtilis str. 168

37.209

100

0.391