Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   HMPREF9319_RS04605 Genome accession   NZ_GL397128
Coordinates   958502..959161 (-) Length   219 a.a.
NCBI ID   WP_041973406.1    Uniprot ID   -
Organism   Streptococcus equinus ATCC 700338     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 953502..964161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS04575 (HMPREF9319_0945) dprA 953602..954444 (-) 843 WP_003064756.1 DNA-processing protein DprA Machinery gene
  HMPREF9319_RS04580 (HMPREF9319_0946) - 954519..955070 (-) 552 WP_003064760.1 sugar O-acetyltransferase -
  HMPREF9319_RS04585 (HMPREF9319_0947) - 955072..955851 (-) 780 WP_003064763.1 ribonuclease HII -
  HMPREF9319_RS04590 (HMPREF9319_0948) ylqF 955838..956692 (-) 855 WP_003064765.1 ribosome biogenesis GTPase YlqF -
  HMPREF9319_RS04595 - 957091..957204 (-) 114 Protein_921 sigma-70 family RNA polymerase sigma factor -
  HMPREF9319_RS04600 (HMPREF9319_0950) - 957501..958505 (-) 1005 WP_003064769.1 sensor histidine kinase -
  HMPREF9319_RS04605 (HMPREF9319_0951) braR 958502..959161 (-) 660 WP_041973406.1 response regulator transcription factor Regulator
  HMPREF9319_RS04610 (HMPREF9319_0952) - 959220..961199 (-) 1980 WP_003064773.1 FtsX-like permease family protein -
  HMPREF9319_RS04615 (HMPREF9319_0953) - 961189..961959 (-) 771 WP_013851827.1 ABC transporter ATP-binding protein -
  HMPREF9319_RS04620 (HMPREF9319_0954) - 962126..962356 (-) 231 WP_003064778.1 hypothetical protein -
  HMPREF9319_RS04625 (HMPREF9319_0955) - 962380..962571 (-) 192 WP_003064779.1 DUF4177 domain-containing protein -
  HMPREF9319_RS04630 (HMPREF9319_0956) - 962650..962907 (-) 258 WP_003064781.1 DUF3592 domain-containing protein -
  HMPREF9319_RS04635 (HMPREF9319_0957) - 963061..963714 (-) 654 WP_003064783.1 ABC-2 transporter permease -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25867.27 Da        Isoelectric Point: 5.4928

>NTDB_id=989412 HMPREF9319_RS04605 WP_041973406.1 958502..959161(-) (braR) [Streptococcus equinus ATCC 700338]
MRIAIIEDDGITRLELSKLLNTQGYETVLLTDFENLTEELKQYCVELVLLDINLPYENGYEVCRKIKQVMPVPIIFVTSR
DTNADELKSIQVGGIDFITKPYDTLILLEKIKRALQLSNPNNFRELVKKDCTLDLHLSILKYQEKSIELTRNEFRILYYF
FMNEDKVISKEELLEKLWNDKYYLDENVLLVNMTRLKKKMKEIGIVHLLENIRGKGWKL

Nucleotide


Download         Length: 660 bp        

>NTDB_id=989412 HMPREF9319_RS04605 WP_041973406.1 958502..959161(-) (braR) [Streptococcus equinus ATCC 700338]
ATGAGAATAGCAATTATTGAAGATGATGGAATCACTCGTCTGGAGCTTTCTAAATTATTGAACACACAAGGATATGAAAC
AGTCTTATTGACTGATTTTGAAAATTTGACAGAGGAATTAAAGCAATATTGCGTAGAGCTGGTTTTGCTTGATATTAACC
TCCCGTATGAAAATGGCTATGAGGTATGCAGGAAAATCAAACAAGTTATGCCAGTACCTATTATCTTTGTAACAAGCAGA
GATACAAATGCTGACGAATTGAAAAGTATTCAAGTGGGCGGAATTGACTTCATCACAAAGCCGTATGACACGCTTATTCT
TCTTGAGAAGATAAAGCGTGCATTGCAGTTATCAAACCCGAATAATTTCCGTGAGCTTGTTAAAAAAGATTGTACCCTTG
ATTTACATTTATCTATTTTGAAGTATCAAGAGAAAAGCATTGAACTGACAAGAAATGAATTTCGTATTTTATACTACTTC
TTTATGAACGAAGATAAAGTTATTAGCAAAGAAGAACTATTGGAAAAGCTGTGGAACGACAAATATTATTTAGACGAGAA
TGTATTACTGGTTAATATGACTCGCCTAAAAAAGAAAATGAAAGAAATCGGTATTGTTCATTTATTGGAAAATATACGAG
GAAAGGGTTGGAAACTGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

39.013

100

0.397