Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HMPREF9319_RS00055 Genome accession   NZ_GL397128
Coordinates   5629..6384 (+) Length   251 a.a.
NCBI ID   WP_003062788.1    Uniprot ID   E0PAY3
Organism   Streptococcus equinus ATCC 700338     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 629..11384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS00035 (HMPREF9319_0002) mreD 1178..1684 (+) 507 WP_013851386.1 rod shape-determining protein MreD -
  HMPREF9319_RS00040 (HMPREF9319_0003) - 1786..3153 (+) 1368 WP_003062782.1 PcsB-like coiled-coil domain-containing protein -
  HMPREF9319_RS00045 (HMPREF9319_0004) - 3294..4262 (+) 969 WP_003062784.1 ribose-phosphate diphosphokinase -
  HMPREF9319_RS00050 (HMPREF9319_0005) - 4464..5639 (+) 1176 WP_003062786.1 pyridoxal phosphate-dependent aminotransferase -
  HMPREF9319_RS00055 (HMPREF9319_0006) recO 5629..6384 (+) 756 WP_003062788.1 DNA repair protein RecO Machinery gene
  HMPREF9319_RS00060 (HMPREF9319_0007) plsX 6556..7551 (+) 996 WP_280521831.1 phosphate acyltransferase PlsX -
  HMPREF9319_RS00065 (HMPREF9319_0008) - 7568..7810 (+) 243 WP_003062793.1 acyl carrier protein -
  HMPREF9319_RS00070 (HMPREF9319_0009) purC 7934..8644 (+) 711 WP_041974149.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29266.58 Da        Isoelectric Point: 6.4980

>NTDB_id=989353 HMPREF9319_RS00055 WP_003062788.1 5629..6384(+) (recO) [Streptococcus equinus ATCC 700338]
MQTKETYGLVLYNRNYREDDKLVKIFTETNGKHMFFVKHAGKSRFNSVIQPLTAAKFILKINDTGLSFIEDYKEVESFKE
INADLFRLSYASYVTALADAAVPDGVADPQLFTFFNKTLSLMEEGLDYEILTNIFEIQLLERFGVSLNFHECAFCHRIGL
PFDFSHKYSGLLCPEHYGKDDYRSHLDPNVLYLVDRFQAIHFDELKTISVKPEMKRKLRLFIDDIYDNYVGLRLKSKKFI
DDLGTWGNIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=989353 HMPREF9319_RS00055 WP_003062788.1 5629..6384(+) (recO) [Streptococcus equinus ATCC 700338]
ATGCAAACTAAGGAAACTTATGGTCTTGTCCTCTATAATCGTAATTATCGTGAGGATGATAAGCTAGTCAAAATTTTTAC
AGAAACCAATGGGAAGCATATGTTTTTTGTTAAACATGCTGGTAAATCTCGGTTTAATTCTGTTATTCAGCCGTTAACGG
CGGCAAAATTTATTTTAAAAATTAATGATACGGGTCTGTCCTTCATTGAAGATTATAAGGAAGTTGAGTCTTTTAAGGAA
ATTAATGCAGATTTGTTTAGATTGTCCTATGCTTCTTATGTGACAGCATTGGCAGATGCAGCTGTGCCAGACGGTGTGGC
AGACCCCCAGTTGTTTACATTTTTTAATAAGACGCTTTCCTTAATGGAAGAGGGACTTGACTACGAAATTTTGACTAATA
TTTTTGAGATTCAACTTTTAGAACGATTTGGTGTTAGTCTTAATTTTCATGAATGTGCTTTTTGTCATCGGATTGGATTG
CCCTTTGATTTTTCGCATAAATATTCTGGTCTACTTTGTCCAGAGCATTATGGTAAAGATGATTATCGTAGTCATCTTGA
TCCGAATGTGCTGTACCTGGTGGACCGATTTCAAGCCATTCATTTTGATGAATTAAAGACGATTTCAGTTAAGCCTGAGA
TGAAACGAAAATTGCGTTTATTTATTGATGATATTTATGATAATTATGTCGGTCTTCGTTTGAAAAGTAAAAAATTCATT
GATGATTTAGGGACTTGGGGAAATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.55

100

0.626