Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   STRINF_RS01790 Genome accession   NZ_DS572685
Coordinates   6477..7232 (+) Length   251 a.a.
NCBI ID   WP_006531293.1    Uniprot ID   A0ABM9XGB8
Organism   Streptococcus infantarius subsp. infantarius ATCC BAA-102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1477..12232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRINF_RS01770 (STRINF_00374) mreD 1974..2489 (+) 516 WP_006531289.1 rod shape-determining protein MreD -
  STRINF_RS01775 (STRINF_00375) - 2591..4012 (+) 1422 WP_006531290.1 CHAP domain-containing protein -
  STRINF_RS01780 (STRINF_00376) - 4155..5126 (+) 972 WP_006531291.1 ribose-phosphate diphosphokinase -
  STRINF_RS01785 (STRINF_00377) - 5312..6487 (+) 1176 WP_006531292.1 pyridoxal phosphate-dependent aminotransferase -
  STRINF_RS01790 (STRINF_00378) recO 6477..7232 (+) 756 WP_006531293.1 DNA repair protein RecO Machinery gene
  STRINF_RS01795 (STRINF_00379) plsX 7368..8363 (+) 996 WP_284702727.1 phosphate acyltransferase PlsX -
  STRINF_RS01800 (STRINF_00380) - 8381..8623 (+) 243 WP_014334167.1 acyl carrier protein -
  STRINF_RS01805 (STRINF_00381) purC 8748..9458 (+) 711 WP_006531296.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29250.71 Da        Isoelectric Point: 6.6953

>NTDB_id=989348 STRINF_RS01790 WP_006531293.1 6477..7232(+) (recO) [Streptococcus infantarius subsp. infantarius ATCC BAA-102]
MQNKETYGLVLYNRNYREDDKLVKIFTETNGKHMFFVKHASKSRFNSAIQPLTVAKFILKINETGLSFIEDYKEVDSFKE
INADLFKLSYASYVTSLADAAVPDGVADPQLFAFLKKTLLLMEEGLDYEILTNIFEIQILERFGVSLNFHECAFCHRVGL
PFDFSHKYSGLLCPEHYAKDEHRSHLDPNVLYLVDRFQAIQFDDLKTISVKPEMKRKLRLFIDDIYDNYVGLRLKSKKFI
DDLGIWGNIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=989348 STRINF_RS01790 WP_006531293.1 6477..7232(+) (recO) [Streptococcus infantarius subsp. infantarius ATCC BAA-102]
ATGCAAAATAAGGAAACTTACGGTCTTGTCCTTTATAATCGTAATTATCGTGAGGATGATAAGTTAGTTAAGATTTTTAC
TGAAACCAATGGGAAACACATGTTTTTTGTGAAACATGCTAGTAAATCTCGTTTTAATTCGGCTATTCAACCGTTAACGG
TAGCTAAATTTATTTTAAAAATCAATGAGACTGGTTTATCTTTTATTGAAGATTATAAGGAAGTTGATTCTTTCAAGGAG
ATTAATGCGGATTTATTTAAGCTATCTTATGCGTCTTATGTGACGTCCCTAGCTGATGCTGCTGTACCAGATGGTGTGGC
AGATCCGCAGTTATTTGCCTTTTTAAAGAAGACTCTTTTGTTGATGGAAGAGGGGCTTGATTACGAGATTTTGACTAATA
TTTTTGAAATTCAGATTTTAGAACGTTTTGGTGTTAGTCTTAATTTTCATGAGTGTGCTTTTTGTCATCGTGTAGGGCTT
CCTTTTGATTTTTCACATAAATATTCTGGGCTGCTTTGTCCAGAACATTATGCTAAGGATGAGCATCGTAGTCATTTGGA
TCCAAATGTTCTTTATCTGGTGGATCGTTTTCAAGCAATTCAATTTGACGATTTGAAGACAATTTCTGTTAAGCCAGAGA
TGAAACGAAAATTACGTTTGTTTATTGATGATATTTATGACAATTATGTTGGTCTTCGATTGAAGAGTAAGAAATTCATC
GATGATTTAGGGATTTGGGGAAATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.948

100

0.629