Detailed information NTG0989341

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: AAG068_RS25890
• Genome accession: NZ_CP152427
• Coordinates: 4958846..4960195 (-)
• Length: 449 a.a.
• NCBI ID: WP_342716338.1
• Uniprot ID: -
• Organism: Bacillus paramycoides strain JYZ-SD5
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4953846..4965195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG068_RS25870 (AAG068_25870)	secA	4954170..4956677 (-)	2508	WP_342716336.1	preprotein translocase subunit SecA	-
AAG068_RS25875 (AAG068_25875)	raiA	4956953..4957495 (-)	543	WP_087959291.1	ribosome-associated translation inhibitor RaiA	-
AAG068_RS25880 (AAG068_25880)	cspC	4957818..4958015 (-)	198	WP_001990088.1	cold shock protein CspC	-
AAG068_RS25885 (AAG068_25885)	-	4958142..4958846 (-)	705	WP_342716337.1	ComF family protein	-
AAG068_RS25890 (AAG068_25890)	comFA	4958846..4960195 (-)	1350	WP_342716338.1	ATP-dependent helicase ComFA	Machinery gene
AAG068_RS25895 (AAG068_25895)	-	4960323..4961741 (-)	1419	WP_342719819.1	NlpC/P60 family protein	-
AAG068_RS25900 (AAG068_25900)	-	4961889..4962203 (-)	315	WP_000400857.1	helix-turn-helix domain-containing protein	-
AAG068_RS25905 (AAG068_25905)	-	4962377..4963219 (-)	843	WP_342716340.1	DegV family protein	-
AAG068_RS25910 (AAG068_25910)	-	4963459..4964094 (+)	636	WP_166702736.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51176.68 Da
• Isoelectric Point: 9.4089

>NTDB_id=989341 AAG068_RS25890 WP_342716338.1 4958846..4960195(-) (comFA) [Bacillus paramycoides strain JYZ-SD5]
MLAGKQLLLEELSSDLRRELSDMEKKGEVVCVQGVMKNASKYTCQRCGNIEQRLFASFLCKRCWEVCTYCRKCITMGRVS
ECAVLVRGIYERNGERGANPLQWNGTLSIGQELAAKGVIEAIKQKESFFIWAVCGAGKTEMLFYGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKHNFRKGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYFNKKYPIFL
FVPHVRYIEEISLLLKGLDNRIDGVHAEDSMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVMYFHYGKTESMVRAKKHIQSMNKNAKEQGMID

Nucleotide

• Length: 1350 bp

>NTDB_id=989341 AAG068_RS25890 WP_342716338.1 4958846..4960195(-) (comFA) [Bacillus paramycoides strain JYZ-SD5]
ATGCTTGCTGGAAAGCAATTACTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAGTTAAGTGATATGGAAAAGAAGGG
AGAGGTCGTATGTGTACAAGGTGTAATGAAGAATGCTTCTAAATATACATGTCAGCGCTGCGGAAATATAGAGCAACGAC
TCTTTGCATCATTTTTATGTAAAAGGTGCTGGGAGGTATGTACGTATTGCCGGAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTCGTTCGCGGAATTTATGAAAGAAACGGAGAAAGGGGGGCAAATCCGTTACAGTGGAATGGGACTTT
ATCTATTGGTCAGGAGTTGGCGGCGAAAGGTGTTATAGAAGCTATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTAT
GCGGCGCTGGGAAAACAGAAATGTTATTTTACGGTATTGCAGAGGCGCTTCAAAAAGGAGAAAGGGTTTGTATTGCAACG
CCAAGAACAGACGTTGTACTGGAATTAGCACCGAGATTACAAGAAGTGTTCCCTAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCGTGAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCATCAACTGTTACGTTACTATAGAGCATTTC
ATGTCATGATCGTAGATGAGATTGATGCCTTCCCCTATCATGCGGATCAAATGTTACAGTATGCAGTGCAACAAGCGATG
AAAGAGAAAGCGGCGCGTATTTATTTAACAGCAACTCCCGATGAAAAGTGGAAGCATAATTTCAGAAAGGGGAAACAAAA
AGGGATCATTGTTTCAGGACGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGCTGGTGCGGGAATTGGAAGAAAA
GCCTTCATCATAAAAAAATTCCTCGAGTGTTACTACAATGGTTGAAAATGTACTTCAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAAGTCTGTTATTGAAAGGGTTGGATAATAGAATCGATGGTGTACATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCAGCGTTCAGAAAGGGAGAAATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGGGTAACTGTGAAGAACTTACAAGTGGCGGTGCTAGGGGCAGAAGAAGAAATTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCGGGTCGTAGTTTTGAAGAGCCATATGGCGAGGTTATGTATTTTCATTACGGTAAGACAGAGTC
GATGGTACGGGCGAAAAAACATATTCAAAGTATGAACAAAAATGCGAAGGAACAAGGAATGATCGACTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (313-408)

• Type III restriction enzyme, res subunit (ResIII) (110-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.922	96.659	0.492