Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AAG068_RS21305 Genome accession   NZ_CP152427
Coordinates   4118862..4119905 (-) Length   347 a.a.
NCBI ID   WP_342715736.1    Uniprot ID   -
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4113862..4124905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS21260 (AAG068_21260) - 4114291..4114491 (-) 201 WP_000106081.1 YqzE family protein -
  AAG068_RS21265 (AAG068_21265) - 4114530..4115027 (-) 498 WP_342715728.1 shikimate kinase -
  AAG068_RS21270 (AAG068_21270) - 4115146..4115796 (-) 651 WP_342715729.1 2OG-Fe(II) oxygenase -
  AAG068_RS21275 (AAG068_21275) comGG 4115972..4116343 (-) 372 WP_342715730.1 competence type IV pilus minor pilin ComGG -
  AAG068_RS21280 (AAG068_21280) comGF 4116340..4116810 (-) 471 WP_342715731.1 competence type IV pilus minor pilin ComGF -
  AAG068_RS21285 (AAG068_21285) comGE 4116780..4117082 (-) 303 WP_342715732.1 competence type IV pilus minor pilin ComGE -
  AAG068_RS21290 (AAG068_21290) comGD 4117075..4117530 (-) 456 WP_342715733.1 comG operon protein ComGD -
  AAG068_RS21295 (AAG068_21295) comGC 4117527..4117826 (-) 300 WP_342715734.1 competence type IV pilus major pilin ComGC -
  AAG068_RS21300 (AAG068_21300) comGB 4117838..4118869 (-) 1032 WP_342715735.1 competence type IV pilus assembly protein ComGB -
  AAG068_RS21305 (AAG068_21305) comGA 4118862..4119905 (-) 1044 WP_342715736.1 competence protein ComGA Machinery gene
  AAG068_RS21310 (AAG068_21310) - 4120111..4120806 (+) 696 WP_097843949.1 helix-turn-helix domain-containing protein -
  AAG068_RS21315 (AAG068_21315) - 4120932..4121174 (+) 243 WP_000440714.1 DUF2626 domain-containing protein -
  AAG068_RS21320 (AAG068_21320) - 4121282..4122676 (+) 1395 WP_001094339.1 L-cystine transporter -
  AAG068_RS21325 (AAG068_21325) - 4122908..4123315 (-) 408 WP_342715737.1 hypothetical protein -
  AAG068_RS21330 (AAG068_21330) - 4123403..4123618 (-) 216 WP_071757284.1 DUF3912 family protein -
  AAG068_RS21335 (AAG068_21335) - 4123872..4124183 (+) 312 WP_001093241.1 hypothetical protein -
  AAG068_RS21340 (AAG068_21340) - 4124220..4124708 (-) 489 WP_342715738.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39295.85 Da        Isoelectric Point: 9.3599

>NTDB_id=989330 AAG068_RS21305 WP_342715736.1 4118862..4119905(-) (comGA) [Bacillus paramycoides strain JYZ-SD5]
MNGIESFANTILKEACRVQASDLHIVPRKKDVAVQLRIGKDLMTKHCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQVSIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTLCKSMRKVRQASIYELLYGYELKQAVKEANGEC
VTYKHETLQSSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=989330 AAG068_RS21305 WP_342715736.1 4118862..4119905(-) (comGA) [Bacillus paramycoides strain JYZ-SD5]
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAAGCGTGCAGGGTACAAGCTTCGGATTTACATATTGTGCC
CCGGAAGAAGGATGTAGCGGTTCAACTGCGTATAGGAAAAGATTTAATGACGAAACATTGTATTGAAAAGGAATTTGGAG
AAAAGCTCGTTTCACATTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCCCTGTAT
TTACAAATGGATGGGCAAGAAGTGTATTTACGCCTTTCCACACTTCCAACTGTATATCAAGAGAGTCTCGTTATCCGTCT
TCATTTACAGGTATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGGTTACTCGTATTTACTGGACCGACTGGTTCGGGAAAGACAACAACAATGTATGCGTTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACACTAGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCGGGACTAAAGGCTATTTTACGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCAAAAATTGCTATAAGAGCAAGTTTGACTGGCCACTTAGTAATGACAACACTGCAT
ACAAATGATGCGAAAGGGGCAATACTTAGATTTATGGATTTTGGCATAACGAGGCAAGAGATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTTTATGTAAATCAATGAGGA
AAGTAAGACAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGGTTAAAGAAGCAAATGGGGAATGT
GTCACTTATAAGCACGAAACATTACAATCTTCGATACGAAAAGGGTACGCTTTAGGTTTCTTAGAAGAGGATGTGTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579

Multiple sequence alignment