Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AAG068_RS20045 Genome accession   NZ_CP152427
Coordinates   3907784..3908242 (+) Length   152 a.a.
NCBI ID   WP_342715587.1    Uniprot ID   -
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3902784..3913242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS20030 (AAG068_20030) - 3903455..3903691 (+) 237 WP_342715584.1 hypothetical protein -
  AAG068_RS20035 (AAG068_20035) - 3903851..3905959 (-) 2109 WP_342715585.1 polyphosphate kinase -
  AAG068_RS20040 (AAG068_20040) ppx 3906068..3907615 (-) 1548 WP_342715586.1 exopolyphosphatase -
  AAG068_RS20045 (AAG068_20045) kre 3907784..3908242 (+) 459 WP_342715587.1 YkyB family protein Regulator
  AAG068_RS20050 (AAG068_20050) - 3908274..3908936 (-) 663 WP_342715588.1 YkyA family protein -
  AAG068_RS20055 (AAG068_20055) - 3909578..3910219 (-) 642 WP_342715589.1 diguanylate cyclase -
  AAG068_RS20060 (AAG068_20060) - 3910384..3910617 (+) 234 WP_000939453.1 SPP1 phage holin family protein -
  AAG068_RS20065 (AAG068_20065) - 3910649..3911149 (-) 501 WP_098667473.1 hypothetical protein -
  AAG068_RS20070 (AAG068_20070) - 3911558..3913099 (+) 1542 WP_000445746.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17731.41 Da        Isoelectric Point: 10.6793

>NTDB_id=989326 AAG068_RS20045 WP_342715587.1 3907784..3908242(+) (kre) [Bacillus paramycoides strain JYZ-SD5]
MKPSQPQSQSQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=989326 AAG068_RS20045 WP_342715587.1 3907784..3908242(+) (kre) [Bacillus paramycoides strain JYZ-SD5]
ATGAAACCTTCACAACCACAATCTCAATCACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAGTATTTATACTGGTTAAAAAAGACGGCTTTAGAACGCTTAATTGCCGAGA
AAAAAGCTATTAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATTCCTCCTACCAAAGAAGATTTTCGAATCCTACCACACCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAGACGCTTCAAGATTATATTGGTCCTGAAGCACTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTCCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment