Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAG068_RS07810 Genome accession   NZ_CP152427
Coordinates   1497410..1498012 (-) Length   200 a.a.
NCBI ID   WP_000155592.1    Uniprot ID   A0A0G8BSW4
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1492410..1503012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS07790 (AAG068_07790) dnaD 1492727..1493434 (+) 708 WP_342718801.1 DNA replication protein DnaD -
  AAG068_RS07795 (AAG068_07795) nth 1493450..1494097 (+) 648 WP_342718802.1 endonuclease III -
  AAG068_RS07800 (AAG068_07800) - 1494101..1494619 (+) 519 WP_342718803.1 YpoC family protein -
  AAG068_RS07805 (AAG068_07805) - 1494642..1497344 (-) 2703 WP_342718804.1 PBP1A family penicillin-binding protein -
  AAG068_RS07810 (AAG068_07810) recU 1497410..1498012 (-) 603 WP_000155592.1 Holliday junction resolvase RecU Machinery gene
  AAG068_RS07815 (AAG068_07815) - 1498116..1499141 (+) 1026 WP_342718805.1 DUF2515 domain-containing protein -
  AAG068_RS07820 (AAG068_07820) - 1499412..1499588 (-) 177 WP_342718806.1 phage portal protein -
  AAG068_RS07825 (AAG068_07825) - 1499674..1499916 (+) 243 WP_342718807.1 hypothetical protein -
  AAG068_RS07830 (AAG068_07830) - 1499932..1500276 (+) 345 WP_342718808.1 YppE family protein -
  AAG068_RS07835 (AAG068_07835) - 1500302..1500493 (-) 192 WP_000242661.1 YppF family protein -
  AAG068_RS07840 (AAG068_07840) - 1500671..1501141 (+) 471 WP_306185525.1 YppG family protein -
  AAG068_RS07845 (AAG068_07845) - 1501297..1501743 (+) 447 WP_342718809.1 CotD family spore coat protein -
  AAG068_RS07850 (AAG068_07850) - 1501800..1502354 (+) 555 WP_342718810.1 DUF1273 domain-containing protein -
  AAG068_RS07855 (AAG068_07855) gpsB 1502452..1502787 (+) 336 WP_342718811.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.61 Da        Isoelectric Point: 9.4277

>NTDB_id=989319 AAG068_RS07810 WP_000155592.1 1497410..1498012(-) (recU) [Bacillus paramycoides strain JYZ-SD5]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=989319 AAG068_RS07810 WP_000155592.1 1497410..1498012(-) (recU) [Bacillus paramycoides strain JYZ-SD5]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACGAATGAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAGTACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGAAGAAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8BSW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment