Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AAG068_RS06480 Genome accession   NZ_CP152427
Coordinates   1253686..1254009 (-) Length   107 a.a.
NCBI ID   WP_000578877.1    Uniprot ID   A0A3P1BX61
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248686..1259009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS06455 (AAG068_06455) - 1248974..1250260 (+) 1287 WP_342718608.1 D-alanyl-D-alanine carboxypeptidase family protein -
  AAG068_RS06460 (AAG068_06460) - 1250450..1251019 (+) 570 WP_342718609.1 signal peptidase I -
  AAG068_RS06465 (AAG068_06465) - 1251082..1251669 (+) 588 WP_342718610.1 CalY family protein -
  AAG068_RS06470 (AAG068_06470) - 1251832..1252602 (+) 771 WP_342718611.1 DUF4047 domain-containing protein -
  AAG068_RS06475 (AAG068_06475) calY 1253018..1253611 (+) 594 WP_000053740.1 biofilm matrix protein CalY -
  AAG068_RS06480 (AAG068_06480) sinR 1253686..1254009 (-) 324 WP_000578877.1 helix-turn-helix domain-containing protein Regulator
  AAG068_RS06485 (AAG068_06485) - 1254089..1254223 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  AAG068_RS06490 (AAG068_06490) inhA1 1254567..1256957 (+) 2391 WP_342718612.1 M6 family metalloprotease immune inhibitor InhA1 -
  AAG068_RS06495 (AAG068_06495) - 1257129..1258496 (+) 1368 WP_342718613.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.15 Da        Isoelectric Point: 8.5404

>NTDB_id=989317 AAG068_RS06480 WP_000578877.1 1253686..1254009(-) (sinR) [Bacillus paramycoides strain JYZ-SD5]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=989317 AAG068_RS06480 WP_000578877.1 1253686..1254009(-) (sinR) [Bacillus paramycoides strain JYZ-SD5]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGCAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P1BX61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment