Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACOIV2_RS19415 Genome accession   NZ_CP184779
Coordinates   4246379..4247827 (-) Length   482 a.a.
NCBI ID   WP_253570752.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain B101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4241379..4252827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOIV2_RS19390 (ACOIV2_19390) - 4241849..4243012 (-) 1164 WP_253570749.1 hypothetical protein -
  ACOIV2_RS19395 (ACOIV2_19395) - 4243091..4243831 (-) 741 WP_253570751.1 SDR family NAD(P)-dependent oxidoreductase -
  ACOIV2_RS19400 (ACOIV2_19400) - 4243902..4244033 (-) 132 WP_256461572.1 hypothetical protein -
  ACOIV2_RS19405 (ACOIV2_19405) purF 4244049..4245554 (-) 1506 WP_014495832.1 amidophosphoribosyltransferase -
  ACOIV2_RS19410 (ACOIV2_19410) - 4245583..4246212 (-) 630 WP_011086837.1 CvpA family protein -
  ACOIV2_RS19415 (ACOIV2_19415) radA/sms 4246379..4247827 (-) 1449 WP_253570752.1 DNA repair protein RadA Machinery gene
  ACOIV2_RS19420 (ACOIV2_19420) - 4248030..4249187 (+) 1158 WP_244436674.1 ABC transporter substrate-binding protein -
  ACOIV2_RS19425 (ACOIV2_19425) - 4249187..4251265 (+) 2079 WP_253570753.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  ACOIV2_RS19430 (ACOIV2_19430) - 4251272..4251997 (-) 726 WP_354268147.1 sulfite exporter TauE/SafE family protein -
  ACOIV2_RS19435 (ACOIV2_19435) rpiB 4252102..4252548 (-) 447 WP_028149726.1 ribose 5-phosphate isomerase B -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 50628.71 Da        Isoelectric Point: 7.6932

>NTDB_id=989310 ACOIV2_RS19415 WP_253570752.1 4246379..4247827(-) (radA/sms) [Bradyrhizobium japonicum strain B101]
MAKNTLSFVCQNCGAAYNRWQGKCESCGEWNTLAEEDTSGSVPVSIRSKRKGRTFALESLAGKSPDAPRLSSGMTELDRV
TGGGFVRGSVLLVGGDPGIGKSTLLTQATSMMARAGHRIVYISGEEAVAQVRLRAERLGLSDAPVQLAAETSVEDIVSTL
SEGAVPRLIVIDSIQTMWTDTVESAPGTVTQVRASAQALIRFAKKTGAAIILVGHVTKDGQIAGPRVVEHMVDAVLSFEG
EGSQQFRILRAVKNRFGPTDEIGVFEMTGLGLREVTNPSELFLSERDLGTPGTAVFAGIEGTRPVLVELQALVAPTSLGT
PRRAVVGWDQSRLSMVLAVLEAHCGVKLSGHDVYLNVAGGLRINEPAADMAAAAALVSSLVNAQLPTDAVYFGEISLSGV
IRPVAQTPARLKEAFKLGFKRAVLPESARSGDAGGDAGLSLNAINSLTTLVAEIAARGSRRGEQSAPAEKNATPARFRRG
EG

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=989310 ACOIV2_RS19415 WP_253570752.1 4246379..4247827(-) (radA/sms) [Bradyrhizobium japonicum strain B101]
ATGGCCAAGAACACGCTTTCCTTCGTCTGCCAGAACTGCGGCGCGGCCTATAACCGCTGGCAGGGCAAGTGCGAGTCCTG
CGGCGAGTGGAACACGCTTGCCGAGGAGGATACGTCCGGCAGCGTGCCGGTCTCGATCCGCTCCAAGCGCAAGGGACGGA
CGTTTGCGCTGGAGAGCCTCGCCGGCAAAAGCCCGGACGCTCCTCGCCTGTCCTCGGGCATGACCGAGCTCGACCGCGTC
ACCGGTGGCGGCTTCGTCCGCGGCTCGGTGCTGCTGGTCGGCGGCGATCCCGGCATCGGCAAGTCGACGCTGCTGACGCA
GGCCACCAGCATGATGGCGCGCGCCGGCCACCGCATCGTCTACATCTCCGGCGAAGAGGCGGTCGCCCAGGTGCGCCTGC
GCGCCGAGCGGCTCGGCCTGTCGGACGCGCCGGTGCAGCTGGCGGCCGAGACCTCCGTCGAGGATATCGTCTCGACGCTG
TCGGAAGGCGCGGTGCCGCGGCTGATCGTGATCGACTCGATCCAGACCATGTGGACCGACACGGTGGAATCCGCGCCCGG
CACGGTCACCCAGGTGCGCGCCTCGGCGCAGGCGCTGATCCGCTTCGCCAAGAAGACGGGTGCGGCCATCATCCTGGTCG
GCCATGTCACCAAGGATGGCCAGATCGCCGGCCCCCGTGTGGTCGAGCACATGGTCGATGCGGTGCTGTCGTTCGAGGGC
GAAGGCTCGCAGCAGTTCCGCATCCTGCGCGCCGTGAAAAACCGCTTCGGCCCGACCGACGAGATCGGCGTGTTCGAGAT
GACCGGCCTTGGCCTGCGCGAGGTCACCAATCCGTCCGAGTTGTTCCTGTCCGAGCGCGATCTGGGCACGCCGGGCACCG
CAGTCTTCGCGGGCATCGAGGGCACGAGGCCCGTTCTGGTCGAATTGCAGGCCTTGGTGGCGCCCACCTCGCTTGGCACC
CCGCGCCGGGCCGTAGTCGGCTGGGATCAGAGCAGGCTCTCCATGGTACTGGCGGTGCTGGAGGCCCATTGCGGGGTCAA
GCTGTCCGGCCACGACGTCTATCTGAACGTCGCGGGCGGCCTGCGCATCAACGAGCCGGCGGCCGATATGGCCGCCGCGG
CCGCACTGGTTTCATCCCTGGTTAATGCGCAGTTACCCACCGATGCCGTCTATTTCGGCGAGATTTCGCTCTCCGGCGTC
ATCCGCCCGGTGGCGCAGACCCCGGCCCGGCTGAAGGAAGCGTTCAAACTCGGCTTCAAGCGCGCCGTGCTGCCCGAATC
GGCCCGGAGCGGCGATGCCGGCGGCGACGCCGGACTGTCCCTGAACGCGATCAACAGCCTGACGACGCTGGTGGCCGAGA
TCGCGGCCCGGGGCTCCCGCCGCGGCGAACAGAGCGCTCCGGCGGAGAAAAATGCCACACCGGCAAGATTCCGCCGTGGA
GAGGGTTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-221)

Subunit ChlI of Mg-chelatase (ChlI)

(337-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.347

90.871

0.421
  radA Streptococcus mitis NCTC 12261

45.244

89.419

0.405
  radA Streptococcus pneumoniae Rx1

44.78

89.419

0.4
  radA Streptococcus pneumoniae D39

44.78

89.419

0.4
  radA Streptococcus pneumoniae R6

44.78

89.419

0.4
  radA Streptococcus pneumoniae TIGR4

44.78

89.419

0.4
  radA Streptococcus mitis SK321

44.78

89.419

0.4

Multiple sequence alignment