Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAG068_RS00220 Genome accession   NZ_CP152427
Coordinates   40659..40943 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35659..45943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS00185 (AAG068_00185) tmk 35661..36287 (+) 627 WP_342716583.1 dTMP kinase -
  AAG068_RS00190 (AAG068_00190) holB 36323..37306 (+) 984 WP_342716584.1 DNA polymerase III subunit delta' -
  AAG068_RS00195 (AAG068_00195) - 37312..38139 (+) 828 WP_325856258.1 stage 0 sporulation family protein -
  AAG068_RS00200 (AAG068_00200) yabA 38154..38504 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  AAG068_RS00205 (AAG068_00205) - 38777..39517 (+) 741 WP_342716585.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AAG068_RS00210 (AAG068_00210) - 39504..39794 (+) 291 WP_306188895.1 GIY-YIG nuclease family protein -
  AAG068_RS00215 (AAG068_00215) rsmI 39763..40638 (+) 876 WP_342716586.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AAG068_RS00220 (AAG068_00220) abrB 40659..40943 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AAG068_RS00225 (AAG068_00225) metG 41461..43443 (+) 1983 WP_342716589.1 methionine--tRNA ligase -
  AAG068_RS00230 (AAG068_00230) - 43610..44377 (+) 768 WP_342716590.1 TatD family hydrolase -
  AAG068_RS00235 (AAG068_00235) rnmV 44594..45151 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=989303 AAG068_RS00220 WP_000843036.1 40659..40943(-) (abrB) [Bacillus paramycoides strain JYZ-SD5]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=989303 AAG068_RS00220 WP_000843036.1 40659..40943(-) (abrB) [Bacillus paramycoides strain JYZ-SD5]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment