Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AAHH95_RS07185 Genome accession   NZ_CP152426
Coordinates   1432922..1435279 (+) Length   785 a.a.
NCBI ID   WP_342753255.1    Uniprot ID   -
Organism   Shouchella clausii strain TIL--21C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1427922..1440279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHH95_RS07155 - 1427995..1428234 (+) 240 WP_035204523.1 hypothetical protein -
  AAHH95_RS07160 spoVB 1428271..1429821 (-) 1551 WP_035204525.1 stage V sporulation protein B -
  AAHH95_RS07165 - 1429990..1430280 (+) 291 WP_011246408.1 post-transcriptional regulator -
  AAHH95_RS07170 secD 1430315..1431616 (+) 1302 WP_342753254.1 protein translocase subunit SecD -
  AAHH95_RS07175 secF 1431606..1432541 (+) 936 WP_073303973.1 protein translocase subunit SecF -
  AAHH95_RS07180 - 1432557..1432859 (+) 303 WP_011246411.1 LapA family protein -
  AAHH95_RS07185 recJ 1432922..1435279 (+) 2358 WP_342753255.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AAHH95_RS07190 - 1435269..1435784 (+) 516 WP_011246413.1 adenine phosphoribosyltransferase -
  AAHH95_RS07195 - 1435898..1438105 (+) 2208 WP_342753256.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AAHH95_RS07200 dtd 1438127..1438567 (+) 441 WP_011246415.1 D-aminoacyl-tRNA deacylase -
  AAHH95_RS07205 - 1438870..1439320 (+) 451 Protein_1372 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87669.27 Da        Isoelectric Point: 5.0225

>NTDB_id=989269 AAHH95_RS07185 WP_342753255.1 1432922..1435279(+) (recJ) [Shouchella clausii strain TIL--21C]
MLQSKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDPFLLKGMEETIERIALAVKRK
ERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFTEGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDI
GLDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLIDENRLL
AKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLLADDEEEAKALATEIDSLNKE
RQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY
QELANNRDILPHFGGHPMAAGMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV
ANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQKPLDGIAFRMGHLFEEITPHAKLSAIGTVSLNEWNGKVKPQLIID
DLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEGTKERLGLDVPVYDYRQAPSFFKAYVVLLDLPSNRVELETL
FSKKGEPSRVYVVFSEEEESFFQTNPNREQFKWYYGFIKKNQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD
DGIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIDGSAETKEESILNGL

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=989269 AAHH95_RS07185 WP_342753255.1 1432922..1435279(+) (recJ) [Shouchella clausii strain TIL--21C]
ATGTTGCAATCAAAAACAAGATGGCGCATTTTAGAACAAAACGAGCTGTTGGCGCAAGAGCTCGCAGACGAGCTGCGTGT
ATCGATGTTAACGGCCCGTCTTCTTGTACGCCGGGGAATCCAAACCGTCCAGGCGGCCAAGCGCTTTTTACACTACGAAG
AGCCGACGTTTTACGATCCCTTTTTGTTGAAAGGGATGGAGGAAACGATTGAACGAATTGCCCTCGCAGTCAAACGAAAA
GAACGCATTCTTGTTTTTGGGGACTATGATGCTGATGGCGTTAGTTCGACTTCCGTGATGCTAACAGCGTTACAAACGTA
TGGCGCCGACTGTGATTACTATATACCAAACCGTTTTACAGAAGGATACGGGCCCAATTGCCCAGCGCTAGACTTTGCAA
AAAGGCAAGGTTATCACTTAGTGATAACAGTCGATACAGGCATTTCTGCTTTGAATGAAGCTGCCCATGCCAAAGACATC
GGCCTGGATTTGATCATTACGGATCACCATGAGCCGGGACCCGTTTTGCCGGATGCCTATGCGATCATTCATCCGAAGCA
GCCGGGCTGCGGCTATCCATTTAAAGAGCTTGCCGGCGTCGGTGTCGCATTTAAGCTAGCCCACGCTTTGAACGGAGAGC
TCCCGGAAGATTTGCTCGACCTTTGTGCGATCGGCACGATTGCCGACTTGGTGCCTCTCATTGATGAAAATCGGCTGCTG
GCCAAAAAGGGGCTTCGCGCGATTGAATCAAGCGGCCGCCCTGGGATCCGTGCCTTAAAGGAAGTATGCGGCATGAAGCA
GGAAGCAATGGATGCCGACCATATCGGCTTTGCGATTGGCCCTCGTCTAAATGCAGCAGGGCGGCTCGATTCTGCTAATC
CAGCCGTTGAGCTGCTCCTTGCTGATGATGAAGAAGAAGCAAAAGCGCTAGCCACAGAAATCGATAGCCTCAATAAAGAA
CGGCAAGCAATTGTTAGCAAAATGACAGAAGAAGCGATTCGCCTTGTGGAAACAACCTATGGCACAAAGATCCCCCATGC
CATCGTTGTAGCGAAGGAAGGCTGGAATCCAGGGGTCATCGGGATTGTCGCTTCTCGCCTTGTAGAGCAGTTTTACCGTC
CGACAATTGTCATGAGCATTGACGAATCTTCAGGACTTGCGAAAGGCTCGGCCAGAAGCATCGAAGGGTTTGACATGTAC
CAAGAATTGGCGAATAACCGGGATATACTTCCTCATTTTGGCGGACACCCGATGGCGGCAGGGATGACACTTAAAACCGA
GGACATTGACGACTTACGTTCTCGTTTAATCAAGCAAGCCAAGGAGACACTAACGGACGACATGCTTACGCCAGCCACGG
ATATAGACCTCGTTGCAGAAGTGGAGGATGTAACCGTTCAAGTGATTGGCGAGTTGCAGGCACTTGCCCCGTTTGGCGTT
GCCAACCGTAAACCGATTGTACTTGTTGAGGGTGCGCATATTTCCGATATGCGCCGGATTGGCAGCAACCAAAACCATTT
AAAAATCCAATTTACTGGCGCCCAAAAGCCGCTTGACGGAATTGCCTTTAGAATGGGGCATTTGTTTGAAGAGATCACGC
CACATGCAAAGTTATCTGCCATCGGAACGGTATCGTTGAATGAATGGAACGGAAAAGTAAAGCCACAACTTATTATTGAC
GATCTTGCCGTATTGGAGTGGCAACTATTTGATTGGCGCAGCATCCAGCCAAACCGTTTAAACAGCCGGTTGCTTGACTT
GCCTCGTGAAAAACTCGTCGCTATTTCCTTTCAAGAAGGGACAAAAGAAAGACTTGGGTTGGACGTACCCGTATATGATT
ACCGGCAAGCGCCTTCCTTTTTTAAAGCTTACGTCGTGTTGCTCGATTTGCCTAGCAACCGGGTTGAACTGGAAACTCTG
TTTTCTAAGAAAGGGGAGCCAAGCCGTGTTTATGTTGTGTTCTCTGAGGAAGAAGAATCGTTTTTTCAAACGAATCCAAA
CCGCGAGCAGTTCAAATGGTATTATGGTTTTATTAAGAAAAACCAACGCTTTTCACTGAATCAACTCGGCGCGAAGCTCG
AAAAGCACAAAGGCTGGTCAGCCCGCACGGTCGAATTTATGACCACTGTATTTTTAGAACTTGGTTTTATCAAGCTTGAC
GACGGCATCGTTGAAGCAGTAGAAAACCCTGAAAAAAAAGCGTTGACTGCATCGCCGACCTACCAAGCCAAGCAGGAAAA
AGCATGGCTTGAGAATGAATTTGTTTTTGCTTCTTATCAACAGTTAAAAGAATGGTTCCAGGCTGCCATCGATGGGAGCG
CTGAAACAAAAGAGGAGTCGATCCTAAATGGATTATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

50.888

100

0.511

Multiple sequence alignment