Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AAFQ93_RS04945 Genome accession   NZ_CP152419
Coordinates   1029167..1029460 (+) Length   97 a.a.
NCBI ID   WP_000797747.1    Uniprot ID   F5VYE2
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1024167..1034460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS04920 (AAFQ93_04910) - 1025120..1025971 (+) 852 WP_375554824.1 hypothetical protein -
  AAFQ93_RS04925 (AAFQ93_04915) - 1026094..1026429 (+) 336 WP_042902790.1 nucleotide pyrophosphohydrolase -
  AAFQ93_RS04930 (AAFQ93_04920) - 1026429..1028174 (+) 1746 WP_375554825.1 DUF2075 domain-containing protein -
  AAFQ93_RS04935 (AAFQ93_04925) - 1028228..1028632 (+) 405 WP_375554826.1 YbgA family protein -
  AAFQ93_RS04940 (AAFQ93_04930) - 1028616..1028981 (+) 366 WP_373114764.1 TIGR02328 family protein -
  AAFQ93_RS04945 (AAFQ93_04935) HI0659 1029167..1029460 (+) 294 WP_000797747.1 helix-turn-helix domain-containing protein Machinery gene
  AAFQ93_RS04950 (AAFQ93_04940) metE 1029806..1032055 (+) 2250 WP_375554827.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AAFQ93_RS04955 (AAFQ93_04945) metF 1032118..1032984 (+) 867 WP_223140733.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10707.37 Da        Isoelectric Point: 5.8787

>NTDB_id=989171 AAFQ93_RS04945 WP_000797747.1 1029167..1029460(+) (HI0659) [Streptococcus nidrosiense strain SO-23-1]
MKNSAIGSNWKDVRSQLFTKEEILESDMRVAIMSELIEARHEQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKG

Nucleotide


Download         Length: 294 bp        

>NTDB_id=989171 AAFQ93_RS04945 WP_000797747.1 1029167..1029460(+) (HI0659) [Streptococcus nidrosiense strain SO-23-1]
ATGAAGAATAGTGCTATTGGGAGTAATTGGAAGGATGTTCGGTCTCAACTATTTACCAAGGAGGAAATCCTTGAAAGTGA
TATGCGAGTGGCTATCATGAGTGAGTTGATTGAGGCTAGGCATGAGCAAGGAATTAGCCAGAAAAAGTTAGAAGAACTTA
GTGGAGTGAGCCAGCCAGTCATAGCTAGGATGGAAACAGGAAAGACCAGTCCTCAGTTAGACACGGTCTTGAAAGTTTTA
GCCAGTTTAGGAAAGACACTAGCAGTTGTACCACTTGAACAGGAAAAAGGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5VYE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment