Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   AAFQ93_RS04575 Genome accession   NZ_CP152419
Coordinates   950300..951253 (+) Length   317 a.a.
NCBI ID   WP_375555723.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 945300..956253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS04560 (AAFQ93_04550) rpoE 946450..947025 (+) 576 WP_049502915.1 DNA-directed RNA polymerase subunit delta -
  AAFQ93_RS04565 (AAFQ93_04555) - 947343..948950 (+) 1608 WP_375555721.1 CTP synthase -
  AAFQ93_RS04570 (AAFQ93_04560) - 949069..950196 (+) 1128 WP_375555722.1 N-acetylmuramoyl-L-alanine amidase family protein -
  AAFQ93_RS04575 (AAFQ93_04565) comYH 950300..951253 (+) 954 WP_375555723.1 class I SAM-dependent methyltransferase Machinery gene
  AAFQ93_RS04580 (AAFQ93_04570) - 951304..952494 (+) 1191 WP_375555724.1 acetate kinase -
  AAFQ93_RS04585 (AAFQ93_04575) birA 952552..953487 (-) 936 WP_375555725.1 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA -
  AAFQ93_RS04590 (AAFQ93_04580) - 953698..954888 (+) 1191 WP_301559063.1 O-antigen ligase -
  AAFQ93_RS04595 (AAFQ93_04585) - 955082..955630 (-) 549 WP_375555726.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35994.22 Da        Isoelectric Point: 4.2498

>NTDB_id=989168 AAFQ93_RS04575 WP_375555723.1 950300..951253(+) (comYH) [Streptococcus nidrosiense strain SO-23-1]
MDFEKIEQAYTYLLENVQIIQNDLTTNFYDALIEQNGIYLDGQTNLEDVKKNNQALKRLALRKEEWLRTYQFLLMKAAQT
EPLQANHQFTPDVIGHLMIFLIEQLWPAENLSLLELGSGMGILGASFLTSMNKKVDYLGIELDDLLIDLAASMAEVMDLQ
MGFVQGDAVRPQVLKESDIIVSDLPIGYYPDDQIASRYQVAAKDEHTYAHHLLMEQSLKYLKTGGYAIFLAPTDLLTSPQ
SDLLKGWLTEQAQLVAIIALPEDLFAQGAQSKTIFVLQKKVGEGTEPFVYPLASLRDPEILLEFKENFQNWCQEHEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=989168 AAFQ93_RS04575 WP_375555723.1 950300..951253(+) (comYH) [Streptococcus nidrosiense strain SO-23-1]
ATGGATTTTGAAAAAATTGAACAAGCATATACCTATTTACTAGAAAATGTCCAAATCATTCAAAATGATTTGACGACAAA
TTTTTACGATGCCTTGATTGAGCAAAATGGAATCTATCTAGATGGTCAGACAAATCTGGAAGATGTCAAGAAAAACAATC
AAGCATTAAAACGATTGGCTCTTCGAAAAGAAGAGTGGTTACGAACCTACCAATTCTTGTTAATGAAGGCAGCGCAAACA
GAACCTCTCCAAGCAAATCACCAGTTTACACCAGATGTCATTGGTCACTTGATGATTTTTCTGATAGAGCAACTGTGGCC
TGCTGAGAATCTAAGTTTATTAGAGTTGGGGTCTGGGATGGGAATTCTAGGTGCTAGCTTCTTAACGTCCATGAACAAAA
AGGTAGATTACCTTGGGATTGAGCTAGATGACCTCTTGATCGATCTGGCTGCAAGCATGGCAGAAGTTATGGATCTGCAA
ATGGGCTTTGTCCAAGGAGATGCAGTACGTCCACAAGTATTAAAAGAAAGTGATATTATTGTGAGCGACCTCCCGATTGG
CTACTACCCAGACGATCAGATCGCTTCACGTTACCAAGTGGCAGCAAAGGATGAACATACTTACGCTCATCATCTATTAA
TGGAGCAATCTCTCAAGTATCTTAAGACGGGAGGTTATGCTATTTTCCTTGCTCCAACAGATCTTTTGACGAGTCCTCAG
AGTGACCTCTTGAAAGGATGGTTAACTGAACAGGCTCAACTAGTCGCTATCATAGCTTTACCAGAGGATCTCTTCGCTCA
AGGAGCCCAGTCTAAGACCATTTTTGTTTTGCAAAAGAAGGTGGGAGAAGGGACAGAGCCCTTTGTTTATCCACTTGCTA
GTCTTCGTGATCCTGAAATTTTGTTGGAATTTAAGGAAAATTTTCAAAATTGGTGTCAAGAACATGAAATCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

56.19

99.369

0.558
  comYH Streptococcus mutans UA140

55.873

99.369

0.555

Multiple sequence alignment