Detailed information NTG0989157

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AAFQ93_RS02730
• Genome accession: NZ_CP152419
• Coordinates: 542292..544724 (+)
• Length: 810 a.a.
• NCBI ID: WP_075228382.1
• Uniprot ID: -
• Organism: Streptococcus nidrosiense strain SO-23-1
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 537292..549724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFQ93_RS02705 (AAFQ93_02710)	-	538926..539216 (+)	291	WP_375555513.1	MTH1187 family thiamine-binding protein	-
AAFQ93_RS02710 (AAFQ93_02715)	-	539179..539937 (+)	759	WP_247913368.1	ABC transporter permease	-
AAFQ93_RS02715 (AAFQ93_02720)	-	539975..540982 (+)	1008	WP_375555514.1	ABC transporter substrate-binding protein	-
AAFQ93_RS02720 (AAFQ93_02725)	-	540982..541710 (+)	729	WP_375555515.1	ABC transporter ATP-binding protein	-
AAFQ93_RS02725 (AAFQ93_02730)	-	541827..542285 (+)	459	WP_001211286.1	CtsR family transcriptional regulator	-
AAFQ93_RS02730 (AAFQ93_02735)	clpC	542292..544724 (+)	2433	WP_075228382.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
AAFQ93_RS02735 (AAFQ93_02740)	-	544972..546029 (+)	1058	Protein_492	AAA family ATPase	-
AAFQ93_RS02740 (AAFQ93_02745)	pnuC	546039..546815 (+)	777	WP_375555516.1	nicotinamide riboside transporter PnuC	-
AAFQ93_RS02745 (AAFQ93_02750)	-	546817..547590 (+)	774	WP_223140445.1	NUDIX hydrolase	-
AAFQ93_RS02750 (AAFQ93_02755)	-	547803..548033 (-)	231	WP_375555517.1	hypothetical protein	-
AAFQ93_RS02755 (AAFQ93_02760)	-	548315..549007 (+)	693	WP_375555518.1	hypothetical protein	-

Sequence

Protein

• Length: 810 a.a.
• Molecular weight: 90213.29 Da
• Isoelectric Point: 6.3049

>NTDB_id=989157 AAFQ93_RS02730 WP_075228382.1 542292..544724(+) (clpC) [Streptococcus nidrosiense strain SO-23-1]
MKYSKALRECIESAFLVASHFGAEYLESWHLLIAMANHGYSVAGATLNEFPYEIDRLEEVAVELTETKYSDKEHYQELPF
SHRLKVLLLEAEHVASVVHAKVLGTEHVLYAILHDGNALATRILEKAGFSYEDQKDQVKIAGLRRSLEARAGWTREDLKA
LRQRHRTVADKQNSMANMMGMPQTPSGGLEDYTHDLTEQARSGKLEPVIGRDQEISRMIQILSRKTKNNPVLVGDAGVGK
TALALGLAQRIANGDVPDEMAKMRVLELDLMNVVAGTRFRGDFEERMNNIIKDIEEDGKVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVMIEEPSLADSMAILQGLKATYEKHHHVQITDDAVET
AVKMAHRYLTSRHLPDSAIDLLDEAAATVQNKSKHAKQDESGLTPADKALMDGKWKQAAQLIAKEQEVPVYKDLVTESDI
LTTLSRLSGIPVQKLTQTDAKKYLNLEAELHKRVIGQEQAVSSISRAIRRNQSGIRNNKRPIGSFMFLGPTGVGKTELAK
ALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDD
GVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQENMEKRMFEELKKAYRPEFINRIDEKVVFHSLSS
QDMQEVVKIMVKPLIASLAEKGIDLKLQASALKLLAQQGYDPEMGARPLRRTLQTEVEDKLAELLLKGELEAGKTLKIGV
KAGQLKFEIV

Nucleotide

• Length: 2433 bp

>NTDB_id=989157 AAFQ93_RS02730 WP_075228382.1 542292..544724(+) (clpC) [Streptococcus nidrosiense strain SO-23-1]
ATGAAATATTCAAAAGCATTGAGAGAATGTATAGAAAGTGCCTTTCTGGTCGCCAGTCATTTTGGGGCAGAATACCTAGA
GTCATGGCATCTATTGATTGCTATGGCCAATCATGGTTACAGTGTAGCTGGGGCGACTTTGAACGAATTTCCATATGAGA
TTGATCGTCTGGAGGAAGTTGCTGTAGAGTTGACTGAAACAAAGTATAGCGATAAGGAACATTATCAGGAGCTGCCTTTT
TCACACCGGTTGAAGGTATTGTTATTGGAAGCAGAGCACGTTGCATCTGTCGTACATGCCAAGGTATTGGGAACAGAGCA
TGTTCTTTATGCTATCTTACATGATGGCAATGCCTTAGCTACTCGCATTTTAGAAAAAGCGGGATTTTCTTACGAAGATC
AGAAGGATCAGGTCAAGATTGCTGGACTTCGTCGAAGTCTTGAAGCGCGTGCTGGTTGGACTAGAGAAGATTTGAAGGCC
CTTCGCCAGCGTCATCGTACGGTAGCGGATAAGCAAAATTCCATGGCTAATATGATGGGTATGCCTCAGACACCAAGTGG
AGGTTTGGAAGATTATACGCATGACCTTACGGAGCAAGCTCGTTCGGGTAAATTGGAACCAGTCATCGGGCGCGACCAAG
AAATCTCTCGTATGATTCAAATCTTGAGCCGTAAGACAAAAAACAATCCAGTCCTAGTTGGAGATGCAGGTGTCGGTAAA
ACAGCTCTAGCACTTGGTCTTGCGCAACGTATTGCCAACGGGGATGTACCTGATGAAATGGCTAAGATGCGAGTTTTAGA
ACTTGATTTGATGAATGTGGTTGCGGGAACTCGTTTCCGTGGTGACTTTGAAGAACGTATGAACAATATCATCAAAGATA
TTGAGGAAGATGGAAAGGTCATCCTCTTTATCGATGAGCTTCATACCATTATGGGGTCAGGAAGTGGGATCGATTCGACC
TTGGATGCGGCTAATATCTTGAAACCTGCCTTGGCACGTGGAACTCTGAGAACTGTCGGTGCGACCACTCAGGAAGAGTA
TCAAAAGCACATCGAAAAAGACGCAGCCCTTTCTCGTCGCTTTGCAAAAGTGATGATTGAGGAGCCAAGTTTAGCAGATA
GTATGGCTATTTTGCAGGGCTTGAAAGCAACTTACGAGAAACACCACCATGTCCAAATTACAGACGATGCAGTAGAAACA
GCTGTCAAAATGGCACATCGTTATTTGACGAGTCGTCATTTGCCAGACTCAGCCATTGATCTATTGGACGAAGCAGCTGC
AACAGTGCAAAATAAATCGAAACACGCTAAACAAGATGAGTCAGGTTTAACACCAGCTGATAAGGCCTTGATGGATGGTA
AATGGAAGCAAGCAGCTCAACTCATTGCAAAAGAGCAGGAAGTTCCAGTCTATAAAGACTTGGTGACAGAATCAGATATT
TTGACCACCTTGAGTCGCTTGTCAGGTATTCCAGTTCAAAAATTGACCCAAACAGATGCCAAGAAGTATCTCAATCTTGA
AGCTGAACTGCATAAACGTGTTATCGGACAGGAACAAGCTGTATCTAGTATCAGTCGTGCCATTCGCCGAAATCAATCGG
GTATTCGCAATAACAAACGTCCAATTGGCTCCTTTATGTTCCTAGGACCAACAGGTGTTGGTAAGACCGAGTTGGCCAAG
GCCTTGGCGGAAGTTCTCTTTGATGATGAGTCTGCTCTTATCCGCTTTGACATGAGTGAATACATGGAGAAATTTGCAGC
CAGTCGTCTCAATGGAGCTCCTCCAGGTTATGTAGGCTACGAAGAAGGCGGGGAGTTGACCGAGAAGGTTCGTAACAAAC
CGTACTCAGTCTTGCTCTTTGACGAAGTAGAGAAGGCACACCCAGATATCTTTAATGTGCTCTTGCAAGTCTTGGATGAT
GGTGTCTTGACAGACAGTAAGGGTCGCAAGGTTGACTTCTCTAATACCATCATCATCATGACTTCAAACCTTGGTGCGAC
AGCTCTTCGTGATGATAAGACAGTTGGTTTTGGAGCTAAGGACATTCGTTTTGACCAAGAAAATATGGAAAAACGGATGT
TTGAGGAGCTGAAAAAGGCTTATCGTCCAGAGTTTATCAACCGTATTGATGAGAAGGTAGTCTTCCATAGCTTGTCAAGT
CAAGATATGCAAGAAGTAGTTAAGATTATGGTCAAACCATTGATTGCTAGTCTTGCAGAAAAAGGAATTGACTTGAAACT
CCAAGCATCTGCCCTTAAACTTCTAGCTCAGCAAGGCTATGATCCAGAGATGGGGGCTCGTCCACTTCGTAGAACCCTAC
AAACGGAAGTGGAAGACAAACTTGCAGAGCTTCTCCTTAAAGGTGAATTGGAAGCTGGCAAGACTCTGAAGATTGGTGTC
AAAGCTGGTCAATTAAAATTTGAGATTGTTTAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (231-364)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (718-798)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (103-137)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-60)

• AAA lid domain (AAA_lid_9) (371-441)

• AAA domain (Cdc48 subfamily) (AAA_2) (540-711)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae D39	92.954	99.877	0.928
clpC	Streptococcus pneumoniae TIGR4	92.954	99.877	0.928
clpC	Streptococcus pneumoniae Rx1	92.954	99.877	0.928
clpC	Streptococcus mutans UA159	67.774	100	0.68
clpC	Streptococcus thermophilus LMD-9	66.503	100	0.669
clpC	Streptococcus thermophilus LMG 18311	66.38	100	0.668
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	50.06	100	0.514
clpC	Bacillus subtilis subsp. subtilis str. 168	45.387	100	0.456
clpE	Streptococcus mutans UA159	48.387	76.543	0.37