Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAFQ93_RS01755 Genome accession   NZ_CP152419
Coordinates   364416..365780 (-) Length   454 a.a.
NCBI ID   WP_375555764.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 359416..370780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS01730 (AAFQ93_01735) srtB 359911..360750 (-) 840 WP_375555453.1 class B sortase, LPKTxAVK-specific -
  AAFQ93_RS01735 (AAFQ93_01740) abpA 360825..361508 (-) 684 WP_375555454.1 amylase-binding adhesin AbpA -
  AAFQ93_RS01740 (AAFQ93_01745) - 361809..362777 (-) 969 WP_000010179.1 ribose-phosphate diphosphokinase -
  AAFQ93_RS01745 (AAFQ93_01750) - 362994..363488 (-) 495 WP_375555455.1 beta-class carbonic anhydrase -
  AAFQ93_RS01750 (AAFQ93_01755) - 363649..364344 (-) 696 WP_375555456.1 TIGR00266 family protein -
  AAFQ93_RS01755 (AAFQ93_01760) radA 364416..365780 (-) 1365 WP_375555764.1 DNA repair protein RadA Machinery gene
  AAFQ93_RS01760 (AAFQ93_01765) - 365791..366306 (-) 516 WP_375555457.1 histidine phosphatase family protein -
  AAFQ93_RS01765 (AAFQ93_01770) - 366325..366627 (-) 303 Protein_321 isochorismatase family protein -
  AAFQ93_RS01770 (AAFQ93_01775) - 366623..366784 (-) 162 Protein_322 DNA repair protein RadA -
  AAFQ93_RS01775 (AAFQ93_01780) - 366795..367334 (-) 540 WP_375555458.1 histidine phosphatase family protein -
  AAFQ93_RS01780 (AAFQ93_01785) - 367336..367779 (-) 444 WP_000701981.1 dUTP diphosphatase -
  AAFQ93_RS01790 (AAFQ93_01795) tadA 368122..368589 (-) 468 WP_375555459.1 tRNA adenosine(34) deaminase TadA -
  AAFQ93_RS01795 (AAFQ93_01800) - 368893..369432 (+) 540 WP_375555460.1 hypothetical protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49570.09 Da        Isoelectric Point: 6.3746

>NTDB_id=989148 AAFQ93_RS01755 WP_375555764.1 364416..365780(-) (radA) [Streptococcus nidrosiense strain SO-23-1]
MIAKKKATFVCQNCEYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLADVTSINVHRTKTEMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEI
ERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEI
RRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=989148 AAFQ93_RS01755 WP_375555764.1 364416..365780(-) (radA) [Streptococcus nidrosiense strain SO-23-1]
ATTATCGCAAAGAAAAAGGCGACATTTGTGTGTCAAAATTGTGAATATAATTCACCCAAGTATCTGGGACGATGCCCTAA
CTGTGGGTCTTGGTCTTCCTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAAAATGCGCGTGTGTCCTTGACAGGTGAGA
AAACCAAGCCCATGAAACTGGCGGATGTGACCTCTATCAATGTCCATCGTACCAAGACGGAAATGGAAGAATTCAACCGT
GTGCTTGGAGGCGGAGTGGTACCAGGAAGTCTTGTCCTTATCGGTGGGGATCCAGGTATTGGGAAATCAACCCTGCTCTT
ACAAGTCTCAACCCAGCTGTCTCAAGTAGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCTCAGCAAATCAAACTCC
GTGCAGAGCGTTTAGGTGATATTGATAGTGAGTTTTATCTCTATGCTGAGACCAATATGCAGAGCGTGCGGGCAGAAATA
GAGAGAATTCAGCCAGATTTTCTCATCATCGACTCTATCCAGACCATCATGTCTCCTGAGATTTCTGGAGTTCAAGGTTC
TGTGTCTCAGGTGCGTGAGGTGACTGCAGAACTCATGCAGCTGGCCAAAACCAATAACATTGCCATCTTTATTGTAGGGC
ATGTGACCAAGGAAGGAACCTTGGCAGGTCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAG
CGTCACCATACTTTTCGTATTCTGAGAGCGGTCAAAAATCGTTTTGGCTCGACAAATGAAATTGGGATTTTTGAGATGCA
ATCAGGTGGCTTGGTTGAGGTGCTCAATCCTAGTCAAGTTTTCCTAGAAGAACGTTTAGATGGTGCAACTGGTTCGTCTA
TCGTGGTGACTATGGAAGGAACCCGTCCGATTTTAGCAGAGGTACAAGCCTTGGTGACACCGACTATGTTTGGAAATGCC
AAGAGGACTACAACAGGCCTTGATTTCAATCGTGCTAGCTTGATTATGGCTGTTTTGGAGAAACGGGCAGGTTTGCTTCT
CCAAAATCAGGATGCCTATCTCAAATCAGCTGGTGGTGTCAAATTGGATGAGCCTGCTATTGACCTTGCGGTAGCAGTAG
CTATTGCGTCAAGCTACAAGGACAAGCCAACCAATCCTCAGGAATGTTTTGTAGGAGAATTAGGTTTGACTGGAGAAATT
CGGCGTGTAAATCGTATCGAGCAGCGCATCAATGAAGCAGCGAAACTTGGATTTACAAAAATCTATGTACCGAAAAATTC
CTTGACAGGAATCACTCCACCCAAGGAAATTCAGGTAATCGGAGTGACGACTATCGGAGAAGTCTTGAAAAAAGTATTTT
CCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(66-219)

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

98.234

99.78

0.98
  radA Streptococcus mitis SK321

98.234

99.78

0.98
  radA Streptococcus pneumoniae Rx1

98.234

99.78

0.98
  radA Streptococcus pneumoniae D39

98.234

99.78

0.98
  radA Streptococcus pneumoniae R6

98.234

99.78

0.98
  radA Streptococcus pneumoniae TIGR4

98.234

99.78

0.98
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

99.78

0.628

Multiple sequence alignment