Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AAFQ93_RS01150 Genome accession   NZ_CP152419
Coordinates   241449..243218 (-) Length   589 a.a.
NCBI ID   WP_375555394.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 236449..248218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS01120 (AAFQ93_01120) - 237042..237407 (-) 366 WP_000216431.1 Asp23/Gls24 family envelope stress response protein -
  AAFQ93_RS01125 (AAFQ93_01125) rpmB 237558..237746 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  AAFQ93_RS01130 (AAFQ93_01130) - 237853..238527 (-) 675 WP_223140272.1 LiaF transmembrane domain-containing protein -
  AAFQ93_RS01135 (AAFQ93_01135) - 238532..238978 (-) 447 WP_006155797.1 LytTR family DNA-binding domain-containing protein -
  AAFQ93_RS01140 (AAFQ93_01140) - 239097..239600 (-) 504 WP_223140273.1 phosphatase PAP2 family protein -
  AAFQ93_RS01145 (AAFQ93_01145) rcrQ 239699..241459 (-) 1761 WP_223140274.1 ABC transporter ATP-binding protein Regulator
  AAFQ93_RS01150 (AAFQ93_01150) rcrP 241449..243218 (-) 1770 WP_375555394.1 ABC transporter ATP-binding protein Regulator
  AAFQ93_RS01155 (AAFQ93_01155) - 243202..243663 (-) 462 WP_223140276.1 MarR family winged helix-turn-helix transcriptional regulator -
  AAFQ93_RS01160 (AAFQ93_01160) - 243871..244545 (+) 675 WP_375555395.1 CD20-like domain-containing protein -
  AAFQ93_RS01165 (AAFQ93_01165) - 244768..245484 (-) 717 WP_223140278.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AAFQ93_RS01170 (AAFQ93_01170) - 245582..246952 (-) 1371 WP_223140279.1 MATE family efflux transporter -
  AAFQ93_RS01175 (AAFQ93_01175) - 247062..247616 (+) 555 WP_223140280.1 GNAT family N-acetyltransferase -
  AAFQ93_RS01180 (AAFQ93_01180) - 247822..248016 (-) 195 WP_049502854.1 PspC domain-containing protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65457.79 Da        Isoelectric Point: 5.6133

>NTDB_id=989143 AAFQ93_RS01150 WP_375555394.1 241449..243218(-) (rcrP) [Streptococcus nidrosiense strain SO-23-1]
MKKLAKRITGKEWGMILLTVLFTCCSVYLELEVPTYVSKITELLGTPGTELGDLWSPAIKMIGLSLLAFLSSVTVGFFAA
RVAASYTTHLRSDIFNRVLDFSQTEIKRFSIPSLLTRTTNDITQVQMLFTMGLQVVTRGPIMAIWAIGKILGKSEYWLWA
VVIAVIVNVLMTTVLLTLAFPKQSVIQKLTDKLNSITRESLTGIRVVRAYNAEDYQDKKFEEANEEVTRLNLFVNRLMAI
MNPIMMAISSGLSLAIYWIGAYIINDASLTDRLPLFSDMVVFMSYAMQVVMGFLLMSALFFVLPRTLVSAGRINQVLDLH
SSIENPSQPQTADSSVKGQVEFRDVTFRYSKNSEAVVEHVSFKAEAGQTIAFIGSTGSGKSTLVNLLPRFYDVSDGEILV
DGVNVQDYDLEDLRNKVGYIPQKAVLFSGDVKGNLDFGKSQETPLSETAMWQALELAQSKNFIEDKEAGLDSEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRQVLAEKTQSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLATNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=989143 AAFQ93_RS01150 WP_375555394.1 241449..243218(-) (rcrP) [Streptococcus nidrosiense strain SO-23-1]
ATGAAGAAACTCGCTAAGCGTATCACAGGAAAAGAGTGGGGAATGATTCTCTTGACTGTTCTCTTTACCTGTTGCTCGGT
CTATCTAGAGTTAGAAGTACCGACTTACGTTTCAAAAATAACAGAATTACTCGGAACGCCAGGTACGGAGCTAGGAGATC
TTTGGTCACCAGCCATTAAGATGATAGGCTTGTCTCTACTTGCTTTCCTCTCATCCGTTACTGTTGGATTTTTTGCCGCT
CGCGTTGCAGCGTCTTACACAACTCATTTACGAAGCGATATTTTTAATCGTGTTCTAGATTTCTCGCAGACAGAGATCAA
ACGTTTTTCAATCCCAAGTCTCTTGACTCGGACGACTAATGATATCACACAGGTTCAGATGCTTTTTACCATGGGACTCC
AGGTGGTCACTCGTGGACCAATCATGGCTATCTGGGCCATTGGAAAAATCCTTGGGAAGTCTGAGTACTGGCTCTGGGCA
GTAGTAATCGCTGTTATCGTCAATGTTTTGATGACAACTGTTCTCCTGACTCTGGCCTTTCCAAAACAATCTGTCATCCA
AAAATTGACAGATAAACTCAATAGTATTACTCGTGAAAGTTTGACAGGGATTCGAGTGGTGCGTGCTTATAATGCCGAGG
ATTATCAAGACAAGAAATTCGAAGAAGCCAATGAGGAAGTCACTCGTCTTAATCTCTTTGTCAACCGTTTGATGGCGATT
ATGAATCCTATTATGATGGCGATTTCGAGTGGCTTGAGTCTAGCTATCTACTGGATTGGAGCCTATATCATCAACGATGC
TAGCCTGACAGACCGTCTACCACTCTTTAGTGATATGGTGGTCTTCATGTCTTATGCCATGCAGGTCGTGATGGGCTTCT
TGCTCATGAGTGCTCTCTTTTTCGTCCTTCCTCGTACCTTGGTTTCTGCAGGACGTATCAATCAGGTGCTAGACTTGCAT
TCTTCTATTGAAAATCCTAGTCAACCACAGACGGCAGATTCATCTGTAAAAGGTCAAGTGGAATTCCGTGATGTAACCTT
CCGTTACTCTAAAAACTCAGAAGCGGTTGTGGAGCACGTCAGTTTCAAGGCAGAAGCTGGTCAAACCATTGCCTTTATCG
GCTCAACTGGTTCTGGTAAATCTACACTTGTGAACCTCTTGCCTCGTTTTTATGATGTATCTGATGGGGAAATCCTAGTA
GACGGTGTCAATGTGCAGGATTATGACTTGGAAGATTTGCGGAATAAAGTCGGCTATATCCCACAAAAAGCAGTCCTCTT
TTCTGGAGATGTTAAGGGCAATCTCGACTTTGGTAAGAGTCAAGAAACGCCACTAAGTGAGACTGCCATGTGGCAAGCTT
TGGAATTGGCTCAATCTAAGAATTTTATCGAGGATAAGGAAGCAGGTCTAGACTCCGAAGTGGCCCAAGGCGGTACCAAC
TTCTCAGGAGGACAAAGACAACGTTTGGCCATTGCACGCGCCTTGGCTCGTAAGCCAGAAATTCTCATTTTTGATGATTC
ATTCTCAGCCTTGGACTACAAGACAGACCGTATCTTACGCCAAGTATTAGCTGAAAAAACACAGTCTATGACCAAGTTGA
TCGTTGCCCAACGCATTTCAACTATCATGGACGCTGACTTGATCTTAGTCTTAGATCAGGGTAAAGTTGTGGGACAAGGC
ACCCACAAGGAACTTCTTGCAACCAACGAAGTTTATCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(54-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

65.89

100

0.672

Multiple sequence alignment